View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12560_high_6 (Length: 308)
Name: NF12560_high_6
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12560_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 24 - 300
Target Start/End: Complemental strand, 11424855 - 11424579
Alignment:
| Q |
24 |
cattttagttgtactcattggtagcactcaacttcataaaaccactagtttgctcagaaataaagacgaatttgacaaaaacatggcagaaccatgattt |
123 |
Q |
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| T |
11424855 |
cattttagttgtactcattggtagcactcaacttcataaaaccactagtttgctcagaaataaagacgaatttgacaaaaacacggcagaaccatgattt |
11424756 |
T |
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| Q |
124 |
tgttgaagcttcaaagtctaatttttgttgaaatcatgtgattgacaaacttgttgtcaatccatccaaaacatgcacttaatattctcagaatagcagg |
223 |
Q |
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| T |
11424755 |
tgttgaagcttcaaagtctaatttttgttgaaatcatgtgattgacaaacttgttgtcaatccatccaaaacatgcacttaatgttctcagaatagcagg |
11424656 |
T |
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| Q |
224 |
tttgtagcaaacaattaaattaaccacaaatagaactgctaaaccattccactgccaaattgtacaacattcatctc |
300 |
Q |
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| T |
11424655 |
tttgtagcaaacaattaaattaaccacaaatagaactgctaaaccattccactgccaaattgtacaacattcatctc |
11424579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 9322513 - 9322563
Alignment:
| Q |
240 |
aaattaaccacaaatagaactgctaaaccattccactgccaaattgtacaa |
290 |
Q |
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| T |
9322513 |
aaatgaaccaaaaatagaactgctaaaccattcctctaccaacttgtacaa |
9322563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 3078920 - 3078965
Alignment:
| Q |
116 |
catgattttgttgaagcttcaaagtctaatttttgttgaaatcatg |
161 |
Q |
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| T |
3078920 |
catgattctgttgaagcttcaaagtgtaatttttgtcaaaatcatg |
3078965 |
T |
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