View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12560_low_1 (Length: 702)

Name: NF12560_low_1
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12560_low_1
NF12560_low_1
[»] chr6 (9 HSPs)
chr6 (426-687)||(7130661-7130922)
chr6 (11-270)||(7130204-7130464)
chr6 (14-270)||(7117823-7118080)
chr6 (458-687)||(7118214-7118444)
chr6 (327-386)||(7118137-7118196)
chr6 (462-511)||(7130644-7130693)
chr6 (327-382)||(7130524-7130579)
chr6 (467-516)||(6431180-6431229)
chr6 (426-458)||(7118236-7118268)
[»] chr7 (2 HSPs)
chr7 (458-555)||(10612878-10612977)
chr7 (649-685)||(10613083-10613119)
[»] chr1 (4 HSPs)
chr1 (167-269)||(47899669-47899771)
chr1 (157-262)||(15244914-15245019)
chr1 (145-265)||(19709962-19710082)
chr1 (19-63)||(26100733-26100777)
[»] chr3 (1 HSPs)
chr3 (199-261)||(863145-863207)
[»] chr8 (1 HSPs)
chr8 (128-265)||(18915571-18915708)
[»] chr2 (1 HSPs)
chr2 (24-69)||(9789631-9789676)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-126; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 426 - 687
Target Start/End: Original strand, 7130661 - 7130922
Alignment:
Q  426 tgtgattaatagttcataaaatgaaccaattcaatcgaaccaaaaaaccgaaatgtgattgatagttcataaattgaaccaattcagtttggttgaatat 525  Q
    |||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7130661 tgtgattaatagttcataaatttgaccaattcaatcgaaccaaaaaaccgaaatgtgattgatagttcataaattgaaccaattcagtttggttgagtat 7130760  T
Q  526 atataattcatgaatcattcgtgacagttttgttttattgatgaaccaacaaaattgcaaaggcagctattggaaaaacaagaaaagtaggatagtagta 625  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7130761 atataattcatgaatcattcgcgacagttttgttttattgatgaaccaacaaaattgcaaaggcagctattggaaaaaccagaaaagtaggatagtagta 7130860  T
Q  626 gccagccccaaatctgatagatgctcacatcagccacatacactaaaaactacagtcccaat 687  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7130861 gccaaccccaaatctgatagatactcacatcagccacatacactaaaaactacagtcccaat 7130922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 11 - 270
Target Start/End: Original strand, 7130204 - 7130464
Alignment:
Q  11 cagagaccggggtgctatagcttcctatagctttccaacaataaacttgtttgcaagaaccatagaaaggtgcttaatccaatcgagcttaacatgctcg 110  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7130204 cagagaccggggtgctatagcttcctatagctttccagcaataaacttgtttgcaagaaccatagaaaggtgcttaatccaatcgagcttaacatgctcg 7130303  T
Q  111 attggat-atgcatctccacatgatggttgagttgaaagacccgtaaggccactagatttccatgaagccatagaaagcaatatatctctatatcgtaac 209  Q
    ||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  7130304 attcgattatgcatctccacatgatggttgagtcgaaagacccgtaaggccaccagatttccatgaagccatagaaagcaatatatctctatatcgtagc 7130403  T
Q  210 aacgctctgccataattgattcattgtttaaaccatgcttttacctttgagaacttgtaac 270  Q
    || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7130404 aaagctctaccataattgattcattgtttaaaccatgcttttacctttgagaacttgtaac 7130464  T

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Target: chr6; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 7117823 - 7118080
Alignment:
Q  14 agaccggggtgctatagcttcctatagctttccaacaataaacttgtttgcaagaaccatagaaaggtgcttaatccaatcgagcttaacatgctcgatt 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  7117823 agaccggggtgctatagcttcctatagctttccagcaataaacttgtttgcaagatccatagaaaggtgcttaatccaatcgagcttaacatgcttgatt 7117922  T
Q  114 ggat-atgcatctccacatgatggttgagttgaaagacccgtaaggccactagatttccatgaagccatagaaagcaatatatctctatatcgtaacaac 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||     
T  7117923 ggattatgcatctccacatgatggttgagttgaaagacccgtaagaccaccagatttccatgaagccatagaaagcaatatatctctatatcgtagcaaa 7118022  T
Q  213 gctctgccataattgattcattgtttaaaccatgcttttacctttgagaacttgtaac 270  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7118023 gctctaccataattgattcattgtttaaaccatgcttttacctttgagaacttgtaac 7118080  T

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Target: chr6; HSP #4
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 458 - 687
Target Start/End: Original strand, 7118214 - 7118444
Alignment:
Q  458 aatcgaaccaaaa-aaccgaaatgtgattgatagttcataaattgaaccaattcagtttggttgaatatatataattcatgaatcattcgtgacagtttt 556  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7118214 aatcgaaccaaaaaaaccgaaatgtgattaatagttcataaattgaaccaattcagtttggttgagtatatataattcatgaatcattcgtgacagtttt 7118313  T
Q  557 gttttattgatgaaccaacaaaattgcaaaggcagctattggaaaaacaagaaaagtaggatagtagtagccagccccaaatctgatagatgctcacatc 656  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  7118314 gttttattgatgaaccaacaaaattgcaaaggcagctattggaaaaaccagaaaagtaggatagtagtagccaaccccaaatctgatagatactcacatc 7118413  T
Q  657 agccacatacactaaaaactacagtcccaat 687  Q
    |||||||||||||||||||||||||||||||    
T  7118414 agccacatacactaaaaactacagtcccaat 7118444  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 327 - 386
Target Start/End: Original strand, 7118137 - 7118196
Alignment:
Q  327 gatatcaagttacgctagtgtgacatttgagcaacttaactagccatacataggattgtt 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7118137 gatatcaagttacgctagtgtgacatttgagcaacttaactagccatacataggattgtt 7118196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 511
Target Start/End: Original strand, 7130644 - 7130693
Alignment:
Q  462 gaaccaaaaaaccgaaatgtgattgatagttcataaattgaaccaattca 511  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||||||    
T  7130644 gaaccaaaaaaccgaaatgtgattaatagttcataaatttgaccaattca 7130693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 7130524 - 7130579
Alignment:
Q  327 gatatcaagttacgctagtgtgacatttgagcaacttaactagccatacataggat 382  Q
    |||||||| ||||| ||| ||||||||||||||| ||||||||||||| |||||||    
T  7130524 gatatcaaattacgttagcgtgacatttgagcaaattaactagccatagataggat 7130579  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 467 - 516
Target Start/End: Original strand, 6431180 - 6431229
Alignment:
Q  467 aaaaaaccgaaatgtgattgatagttcataaattgaaccaattcagtttg 516  Q
    ||||||||||||| |||||  |||||| ||||||||||||||||||||||    
T  6431180 aaaaaaccgaaatttgatttctagttcctaaattgaaccaattcagtttg 6431229  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 426 - 458
Target Start/End: Original strand, 7118236 - 7118268
Alignment:
Q  426 tgtgattaatagttcataaaatgaaccaattca 458  Q
    |||||||||||||||||||| ||||||||||||    
T  7118236 tgtgattaatagttcataaattgaaccaattca 7118268  T

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Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 458 - 555
Target Start/End: Original strand, 10612878 - 10612977
Alignment:
Q  458 aatcgaaccaaaaaaccgaaatgtgattgatagttcataaattgaaccaattcagtttggttga--atatatataattcatgaatcattcgtgacagttt 555  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||| |||||    
T  10612878 aatcgaacaaaaaaaccgaaatgtgattgatagtttataaattgaaccaattcagtttggttgagtatatatataattcatgaatcatccgtgatagttt 10612977  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 649 - 685
Target Start/End: Original strand, 10613083 - 10613119
Alignment:
Q  649 ctcacatcagccacatacactaaaaactacagtccca 685  Q
    |||||||||||||||||||||||| |||| |||||||    
T  10613083 ctcacatcagccacatacactaaagactatagtccca 10613119  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 167 - 269
Target Start/End: Complemental strand, 47899771 - 47899669
Alignment:
Q  167 tttccatgaagccatagaaagcaatatatctctatatcgtaacaacgctctgccataattgattcattgtttaaaccatgcttttacctttgagaacttg 266  Q
    |||||||||||||||||||||| |||| ||| || || |||  || |||||| |||| ||||||| |||||||||| | ||||||||||||||||| |||    
T  47899771 tttccatgaagccatagaaagctatatctctatagattgtagtaaagctctgtcatagttgattctttgtttaaacaacgcttttacctttgagaatttg 47899672  T
Q  267 taa 269  Q
    |||    
T  47899671 taa 47899669  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 262
Target Start/End: Original strand, 15244914 - 15245019
Alignment:
Q  157 ggccactagatttccatgaagccatagaaagcaatatatctctatatcgtaacaacgctctgccataattgattcattgtttaaaccatgcttttacctt 256  Q
    |||||| || || ||| ||||||||| ||||| |||  | | || |||||| ||| |||||| || | ||||||| |||||||||||||| |||||||||    
T  15244914 ggccaccaggttgccaggaagccataaaaagctatagctatgtagatcgtagcaaagctctgtcacagttgattctttgtttaaaccatgattttacctt 15245013  T
Q  257 tgagaa 262  Q
    | ||||    
T  15245014 taagaa 15245019  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 19709962 - 19710082
Alignment:
Q  145 aaagacccgtaaggccactagatttccatgaagccatagaaagcaatatatctctatatcgtaacaacgctctgccataattgattcattgtttaaacca 244  Q
    |||||||| ||||||||| |||||  || ||||||||  ||||  | || ||| ||||||||| ||| |||||| | ||| || ||  ||||||||||||    
T  19709962 aaagacccttaaggccaccagattgacaggaagccatgaaaagttacatctctgtatatcgtagcaaagctctgtcgtaactggttttttgtttaaacca 19710061  T
Q  245 tgcttttacctttgagaactt 265  Q
      ||||||| |||||||||||    
T  19710062 cacttttacttttgagaactt 19710082  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 26100777 - 26100733
Alignment:
Q  19 ggggtgctatagcttcctatagctttccaacaataaacttgtttg 63  Q
    |||| |||||||||||||||| ||||||||  |||||||||||||    
T  26100777 ggggcgctatagcttcctataactttccaatgataaacttgtttg 26100733  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 863145 - 863207
Alignment:
Q  199 tatatcgtaacaacgctctgccataattgattcattgtttaaaccatgcttttacctttgaga 261  Q
    ||||||||| ||| ||| || |||||||||||| |||||||||||| | ||||||||||||||    
T  863145 tatatcgtagcaaagctttgtcataattgattctttgtttaaaccacgtttttacctttgaga 863207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 265
Target Start/End: Original strand, 18915571 - 18915708
Alignment:
Q  128 acatgatggttgagttgaaagacccgtaaggccactagatttccatgaagccatagaaagcaatatatctctatatcgtaacaacgctctgccataattg 227  Q
    |||| ||||||  |||||||||||| |||| |||| || ||| |  ||||||||||||||  |||| |||||| |||||| ||| | |||| ||||| |     
T  18915571 acataatggttatgttgaaagacccctaagaccaccaggttttcgggaagccatagaaagttatatctctctacatcgtagcaaagttctgtcataacta 18915670  T
Q  228 attcattgtttaaaccatgcttttacctttgagaactt 265  Q
    ||| |||||||||||||   ||| | ||||||||||||    
T  18915671 atttattgtttaaaccacattttcatctttgagaactt 18915708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 9789631 - 9789676
Alignment:
Q  24 gctatagcttcctatagctttccaacaataaacttgtttgcaagaa 69  Q
    |||||||||||||||| ||||||| || ||||||||||||||||||    
T  9789631 gctatagcttcctataactttccagcagtaaacttgtttgcaagaa 9789676  T

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