View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12560_low_12 (Length: 287)
Name: NF12560_low_12
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12560_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 31040660 - 31040913
Alignment:
| Q |
12 |
tgcacatgttagacaaaccttattgaaaaatagatcgaagggttttaatacatatttatttttatgaaaagttctaaattgagaattaaaatgtgtacat |
111 |
Q |
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| T |
31040660 |
tgcacatgttagacaaatcttattgaaaaatagatcgaaaggttttaatacatatttatttttatgaaaagttctaaattgagaattaaaatgtgtacat |
31040759 |
T |
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| Q |
112 |
ctagtagatcaatttaattcactacaaaaaagtttttatacaaaatacaactattattcaccttatttatccatatactgtactatcgaaaataaataat |
211 |
Q |
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| T |
31040760 |
ctagtagatcaatttaattcactacaaaaaagtttttatacaaaatccaactattattcaccttatttatccata-----tactatcgaaaataaataat |
31040854 |
T |
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| Q |
212 |
aattaatgtgatcaaatttaatgtctagcctagtgttgcacatatatatgagtgagcca |
270 |
Q |
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| T |
31040855 |
aattaatgtgatcaaatttaatgtctagcctagtgttgcacatatatatgagtgagcca |
31040913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 33 - 270
Target Start/End: Original strand, 31066557 - 31066794
Alignment:
| Q |
33 |
attgaaaaatagatcgaagggttttaatacatatttatttttatgaaaagttctaaattgagaattaaaatgtgt--acatctagtagatcaatttaatt |
130 |
Q |
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| T |
31066557 |
attgaacaattgattgaagggttttaatacatacttatttttatgaaaagt-ctaaattgagaattaaaatatgtttacatctagtagatcaatttaatt |
31066655 |
T |
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| Q |
131 |
cactacaaaaaagtttttatacaaaatacaactattattcaccttatttatccatatactgtactatcgaaaat-aaataata-attaatgtgatcaaat |
228 |
Q |
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| T |
31066656 |
cactacaaaaaagtttttatacaaaatacaactattattcaccttattcatccata-----tactatcgaaagtaaaaaaatatattaatgtgatcaaat |
31066750 |
T |
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| Q |
229 |
ttaatgtctagcctagtgttgcac--atatatatgagtgagcca |
270 |
Q |
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| T |
31066751 |
ttaatgtctagcctagtgttgcacaaatatatatgagtgagcca |
31066794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 31025572 - 31025604
Alignment:
| Q |
71 |
ttttatgaaaagttctaaattgagaattaaaat |
103 |
Q |
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| T |
31025572 |
ttttatgaaaagttctaaattgagaattaaaat |
31025604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 31030918 - 31030962
Alignment:
| Q |
65 |
atttatttttatgaaaagttctaaattgagaattaaaatgtgtac |
109 |
Q |
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| T |
31030918 |
atttacttttattaaaagttctaaattgagaattataatgtgtac |
31030962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 33534876 - 33534916
Alignment:
| Q |
118 |
gatcaatttaattcactacaaaaaagtttttatacaaaata |
158 |
Q |
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| T |
33534876 |
gatcaatttaattcactacaaaaatgttttcaaacaaaata |
33534916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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