View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12560_low_14 (Length: 278)

Name: NF12560_low_14
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12560_low_14
NF12560_low_14
[»] chr3 (7 HSPs)
chr3 (13-268)||(16892994-16893249)
chr3 (52-217)||(51524823-51524988)
chr3 (39-196)||(26796840-26796997)
chr3 (65-164)||(31067144-31067244)
chr3 (105-216)||(29346807-29346918)
chr3 (105-181)||(35526596-35526672)
chr3 (53-187)||(21844920-21845054)
[»] chr2 (7 HSPs)
chr2 (98-268)||(8413765-8413935)
chr2 (57-220)||(14296254-14296417)
chr2 (52-217)||(18811704-18811869)
chr2 (63-216)||(31092283-31092436)
chr2 (63-219)||(37344586-37344742)
chr2 (53-220)||(18693061-18693225)
chr2 (67-191)||(13502653-13502777)
[»] chr1 (10 HSPs)
chr1 (13-218)||(50903480-50903685)
chr1 (13-220)||(49491876-49492082)
chr1 (19-197)||(17114733-17114911)
chr1 (67-216)||(13061962-13062111)
chr1 (53-217)||(41035024-41035188)
chr1 (20-187)||(19394156-19394323)
chr1 (98-217)||(3374305-3374424)
chr1 (113-188)||(14344072-14344147)
chr1 (120-195)||(34566268-34566343)
chr1 (121-187)||(39332359-39332425)
[»] chr7 (3 HSPs)
chr7 (13-220)||(26449532-26449737)
chr7 (105-189)||(19407870-19407954)
chr7 (53-187)||(33191235-33191369)
[»] chr6 (4 HSPs)
chr6 (63-220)||(25167810-25167967)
chr6 (19-220)||(4263365-4263563)
chr6 (53-219)||(10989981-10990147)
chr6 (85-220)||(3949323-3949458)
[»] chr4 (6 HSPs)
chr4 (53-219)||(16832137-16832303)
chr4 (53-220)||(24239839-24240003)
chr4 (63-220)||(37049967-37050125)
chr4 (13-94)||(12579947-12580028)
chr4 (19-188)||(19852407-19852576)
chr4 (19-219)||(16593766-16593966)
[»] chr8 (6 HSPs)
chr8 (53-221)||(27786782-27786950)
chr8 (19-188)||(8831250-8831419)
chr8 (53-196)||(36206440-36206583)
chr8 (63-216)||(29369070-29369223)
chr8 (20-158)||(399778-399916)
chr8 (19-190)||(28225739-28225910)
[»] chr5 (7 HSPs)
chr5 (55-221)||(36868251-36868417)
chr5 (63-220)||(788271-788428)
chr5 (63-216)||(19215349-19215502)
chr5 (53-126)||(37307257-37307330)
chr5 (140-220)||(36150641-36150721)
chr5 (53-164)||(15188023-15188131)
chr5 (170-220)||(32278702-32278752)
[»] scaffold0531 (1 HSPs)
scaffold0531 (65-219)||(10228-10382)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 16892994 - 16893249
Alignment:
Q  13 agttgaggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaag 112  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  16892994 agttgaggaagaggacaatgatgaagccatcacatcaacctttgagcagcactatccaagtctgtcagagagcactaaggcagataaaaagcaaaagaag 16893093  T
Q  113 caggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagt 212  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  16893094 caggtgaacaaagtgaagcctactaggttcaactcagccggaatgaggacccgtgctcaaaagggtgcctccaaagctgccttgccatataccgaatagt 16893193  T
Q  213 tggttcaaatctttgtgaatctgggtgttaagctagtagcttctgccatttctctg 268  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  16893194 tggttcaaatctctgtgaacctgggtgttaagctagtagcttctgccatttctctg 16893249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 52 - 217
Target Start/End: Original strand, 51524823 - 51524988
Alignment:
Q  52 ttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtc 151  Q
    |||||||||||||||||||||||| || ||||| | |||||| || | |||| |||||||||||||| | ||||||| ||||  |||||| ||||||| |    
T  51524823 ttttgagcagcactatccaagtctatctgagagcaataaggctgagagaaagaagaagaagcaggtgcataaagtgaggccttatagctttaactcagcc 51524922  T
Q  152 ggaatgaggacccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggtt 217  Q
    ||||||||||||| ||  ||||||||  ||||||||||| ||||| || || |  |||||||||||    
T  51524923 ggaatgaggacccgtgcccaaaagggctcctccaaagctaccttgacagatgcaaaatagttggtt 51524988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 196
Target Start/End: Complemental strand, 26796997 - 26796840
Alignment:
Q  39 ccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactag 138  Q
    |||||| ||||  ||||||||||||| |||| ||||| || ||||| ||||||||||| | |||| |||||||||| || |||||||||||| |||| ||    
T  26796997 ccatcatatcagattttgagcagcaccatccgagtctatctgagagcactaaggcagagagaaagaagaagaagcatgttaacaaagtgaagtctaccag 26796898  T
Q  139 cttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaagctgccttg 196  Q
    ||| |||||||||| |||||||| ||||   ||||| ||| |||| |||| |||||||    
T  26796897 ctttaactcagtcgaaatgaggaaccatacccaaaatggtgcctctaaagttgccttg 26796840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 31067144 - 31067244
Alignment:
Q  65 tatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtc-ggaatgaggacc 163  Q
    ||||||||||| || ||||| ||||||||||| |||||| |||||||||| ||| ||||||||| || | ||||||| ||||||||| ||||||||||||    
T  31067144 tatccaagtctatcggagagcactaaggcagagaaaaagaagaagaagcatgtgcacaaagtgaggcttgctagctttaactcagtcgggaatgaggacc 31067243  T
Q  164 c 164  Q
    |    
T  31067244 c 31067244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 29346807 - 29346918
Alignment:
Q  105 agaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaagctgccttgccatatac 204  Q
    ||||||||||||||||||| |||| ||||  |||||| |||| || |||||||||||||| ||  |||||| ||||||||||||| |||||| || ||||    
T  29346807 agaagaagcaggtgaacaacgtgatgccttatagctttaacttagccggaatgaggacccgtgcacaaaagagtacctccaaagccgccttgacagatac 29346906  T
Q  205 cgaatagttggt 216  Q
      ||||||||||    
T  29346907 ataatagttggt 29346918  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 35526672 - 35526596
Alignment:
Q  105 agaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacc 181  Q
    |||||||||||||||||||||||| |||| ||||||| ||||| | |||||||||||||| ||  ||||||||||||    
T  35526672 agaagaagcaggtgaacaaagtgatgccttctagctttaactcggccggaatgaggacccgtgcccaaaagggtacc 35526596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 187
Target Start/End: Complemental strand, 21845054 - 21844920
Alignment:
Q  53 tttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcg 152  Q
    |||||||||||||||||||| || |  ||||| | ||||||||| |||||  |||||||||  ||||  ||||||||| || || | || |||||||  |    
T  21845054 tttgagcagcactatccaagcctatatgagagcattaaggcagagaaaaattagaagaagcctgtgagaaaagtgaagtctgcttgatttaactcagctg 21844955  T
Q  153 gaatgaggacccatgttcaaaagggtacctccaaa 187  Q
     ||| ||||||| || ||||||||| |||||||||    
T  21844954 aaataaggacccgtgctcaaaagggcacctccaaa 21844920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 8413935 - 8413765
Alignment:
Q  98 aaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaagctgccttgc 197  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||| || ||||||||||||||||||||||| | |||    
T  8413935 aaaaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcaaccggaatgaggacccgtgctcaaaagggtacctccaaagctgtcctgc 8413836  T
Q  198 catataccgaatagttggttcaaatctttgtgaatctgggtgttaagctagtagcttctgccatttctctg 268  Q
    ||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||    
T  8413835 catatactgaatagttggttcaaatctttgtgaacatggttgttaagctagtagcttctgccatttctctg 8413765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 57 - 220
Target Start/End: Complemental strand, 14296417 - 14296254
Alignment:
Q  57 agcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcggaat 156  Q
    ||||||||||||||||||| || ||||| ||||||| ||| | |||| ||||||||||| |||||||| |||||||||||||||| ||||||| ||||||    
T  14296417 agcagcactatccaagtctatctgagagtactaaggtagagagaaagaagaagaagcagatgaacaaaatgaagcctactagctttaactcagccggaat 14296318  T
Q  157 gaggacccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggttcaa 220  Q
    ||| || | ||| ||||||||||||||||||| ||||||| || ||||  ||||||||||||||    
T  14296317 gagcactcgtgtccaaaagggtacctccaaagatgccttggcagatacataatagttggttcaa 14296254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 217
Target Start/End: Complemental strand, 18811869 - 18811704
Alignment:
Q  52 ttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtc 151  Q
    |||||||||||||||||||||| | |  ||||| | ||||||||| | |||| |||||||||||||| | |||||||||| |  |||||| ||||||| |    
T  18811869 ttttgagcagcactatccaagtttatttgagagcaataaggcagagagaaagaagaagaagcaggtgcataaagtgaagctttatagctttaactcagcc 18811770  T
Q  152 ggaatgaggacccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggtt 217  Q
    ||||||||||||| ||  ||||||||  ||||||||||| ||||| || |||| ||||||||||||    
T  18811769 ggaatgaggacccgtgcccaaaagggctcctccaaagctaccttgacagatacagaatagttggtt 18811704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 216
Target Start/End: Original strand, 31092283 - 31092436
Alignment:
Q  63 actatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggac 162  Q
    ||||||||||||| || ||||| |||||| |||| | |||| ||||||| || ||||| ||||||| |||| |||| || ||||||| ||||||||||||    
T  31092283 actatccaagtctatctgagagcactaagacagagagaaagaagaagaatcacgtgaataaagtgatgccttctagatttaactcagccggaatgaggac 31092382  T
Q  163 ccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggt 216  Q
     | ||  |||||||||||||||||||  | ||||||| |||| |||||||||||    
T  31092383 tcgtgcccaaaagggtacctccaaagtcgtcttgccagatacagaatagttggt 31092436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 219
Target Start/End: Original strand, 37344586 - 37344742
Alignment:
Q  63 actatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggac 162  Q
    ||||||||||||| |  || || ||||||||||| | |||| ||||||| ||||||||||||||||| | | |||| || ||||||| |||||||||||     
T  37344586 actatccaagtctatttgaaagcactaaggcagagagaaagaagaagaaacaggtgaacaaagtgaatcattctagttttaactcagccggaatgaggat 37344685  T
Q  163 ccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggttca 219  Q
     | ||  |||||||||| ||||||||| |||||| |||||||  |||||||| ||||    
T  37344686 tcgtgcccaaaagggtatctccaaagccgccttgacatatacataatagttgattca 37344742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 220
Target Start/End: Original strand, 18693061 - 18693225
Alignment:
Q  53 tttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcg 152  Q
    |||| ||||||||||||||  || |  ||||| ||||||||||| ||||||   |||||||  |  |||||||||||| || ||||||| |||| || ||    
T  18693061 tttgtgcagcactatccaaacctttatgagagcactaaggcagagaaaaag---aagaagcgtgcaaacaaagtgaagtctgctagctttaactaagccg 18693157  T
Q  153 gaatgaggacccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggttcaa 220  Q
    |||||||||||  ||   |||||||| ||||||||| || |||| || ||||  ||||||||||||||    
T  18693158 gaatgaggacctgtgcctaaaagggttcctccaaagttgtcttgacagatacaaaatagttggttcaa 18693225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 191
Target Start/End: Original strand, 13502653 - 13502777
Alignment:
Q  67 tccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggacccat 166  Q
    ||||||||| || ||||| ||||||||||| |||||| |||||||||  ||||||||||  | | || ||||||| ||||||| | ||||||||  || |    
T  13502653 tccaagtctttcggagagcactaaggcagagaaaaagaagaagaagctcgtgaacaaaggaaggtctgctagctttaactcagccagaatgagggtccgt 13502752  T
Q  167 gttcaaaagggtacctccaaagctg 191  Q
    |  |||||| ||| |||||||||||    
T  13502753 gcccaaaagagtaactccaaagctg 13502777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 50903685 - 50903480
Alignment:
Q  13 agttgaggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaag 112  Q
    ||||||||||||||||| ||||||||||||| ||||||  ||| |||| ||||||||||||||||||||||| |||||||||||   |||||||||||||    
T  50903685 agttgaggaagaggacaatgatgaagccatcccatcaatatttcagcaacactatccaagtctgtcagagagcactaaggcagagtgaaagcagaagaag 50903586  T
Q  113 caggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagt 212  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||| ||  ||||  |||||||||||||| | |||| |||||||||| ||||    
T  50903585 caggtgaacaaagtgaagcctactagcttcaactcagccgaaatgaggacccgtgcccaaagcggtacctccaaagccgacttggcatataccgattagt 50903486  T
Q  213 tggttc 218  Q
    ||||||    
T  50903485 tggttc 50903480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 49492082 - 49491876
Alignment:
Q  13 agttgaggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaag 112  Q
    |||| |||||||||||| |||| |||||||||||||||  || ||||| |||||||||||||||| |||||| ||||||||||  | |||||||||||||    
T  49492082 agttaaggaagaggacaatgataaagccatcacatcaatcttcgagcaacactatccaagtctgttagagagcactaaggcagggagaaagcagaagaag 49491983  T
Q  113 caggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagt 212  Q
    || ||||||||||||| |||||||||||||||||||| |||||||||||||| ||  ||||||||||||||||||| ||||||| | |||||||||||||    
T  49491982 catgtgaacaaagtga-gcctactagcttcaactcagccggaatgaggacccgtgcccaaaagggtacctccaaagttgccttggcgtataccgaatagt 49491884  T
Q  213 tggttcaa 220  Q
    ||||||||    
T  49491883 tggttcaa 49491876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 17114911 - 17114733
Alignment:
Q  19 ggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtg 118  Q
    |||||| |||| |||||||||||||| ||||   ||||| || |||||| ||||||| || ||||| |||||| |||| | |||| ||||||| || |||    
T  17114911 ggaagaagacaatgatgaagccatcatatcagactttgaccaacactatgcaagtctatctgagagcactaagacagagagaaagaagaagaaacatgtg 17114812  T
Q  119 aacaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaagctgccttgc 197  Q
    ||||||||||||||| ||||||| ||||| | | |||||||||||||||| |||||||||||||||||||| |||||||    
T  17114811 aacaaagtgaagcctgctagctttaactctgccagaatgaggacccatgtccaaaagggtacctccaaagcggccttgc 17114733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 13062111 - 13061962
Alignment:
Q  67 tccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggacccat 166  Q
    ||||||||| || ||||| |||||| |||| |||||| |||||||||||||||||||||||| ||||  |||||| ||||||| || ||||||||||| |    
T  13062111 tccaagtctatctgagagcactaagacagagaaaaagaagaagaagcaggtgaacaaagtgatgccttttagctttaactcagccgaaatgaggacccgt 13062012  T
Q  167 gttcaaaagggtacctccaaagctgccttgccatataccgaatagttggt 216  Q
    | | ||||| ||||||||||||| |||||| || |||| ||||| |||||    
T  13062011 gctgaaaagagtacctccaaagccgccttgacaaatacagaataattggt 13061962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 217
Target Start/End: Complemental strand, 41035188 - 41035024
Alignment:
Q  53 tttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcg 152  Q
    ||||| || |||||||||||||| || ||||| | ||||||||| |||||| |||||||||||||||| |   |||||||| ||||||| ||||||| ||    
T  41035188 tttgaacaacactatccaagtctatctgagagcaataaggcagagaaaaagaagaagaagcaggtgaatattttgaagccttctagctttaactcagccg 41035089  T
Q  153 gaatgaggacccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggtt 217  Q
    |||||||||||| ||  ||||| ||  ||||||||||| ||||| || || | ||||||||||||    
T  41035088 gaatgaggacccgtgcccaaaaaggctcctccaaagctaccttggcaaattctgaatagttggtt 41035024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 19394323 - 19394156
Alignment:
Q  20 gaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtga 119  Q
    ||||||||||  |||||||||||   ||||   |||||||||||||||||||| || || ||||| ||||| ||||| |||||| |||||||||| ||||    
T  19394323 gaagaggacaacgatgaagccattgtatcagactttgagcagcactatccaagcctatcggagagcactaaagcagagaaaaagaagaagaagcatgtga 19394224  T
Q  120 acaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaa 187  Q
     ||||||||||||| || |||| |||| ||  ||||||||||||| ||  ||||||||||||| ||||    
T  19394223 gcaaagtgaagccttcttgctttaacttagctggaatgaggacccgtgcccaaaagggtaccttcaaa 19394156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 3374305 - 3374424
Alignment:
Q  98 aaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaagctgccttgc 197  Q
    |||||| |||||||||| |||||||||||||||||  |||| || ||||||| ||||||||||||   ||  |||||||||| ||||||||||||||||     
T  3374305 aaaaagaagaagaagcaagtgaacaaagtgaagccggctagatttaactcagccggaatgaggacatgtgcccaaaagggtagctccaaagctgccttgg 3374404  T
Q  198 catataccgaatagttggtt 217  Q
     |  ||| ||||||||||||    
T  3374405 aagctacagaatagttggtt 3374424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 14344072 - 14344147
Alignment:
Q  113 caggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaag 188  Q
    ||||||||||||||||||||| |||| || |||||| ||||||||| ||| | ||| |||||||||||||||||||    
T  14344072 caggtgaacaaagtgaagccttctagttttaactcaatcggaatgatgactcgtgtccaaaagggtacctccaaag 14344147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 34566343 - 34566268
Alignment:
Q  120 acaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaagctgcctt 195  Q
    ||||||||||| ||||||||||||||||||  ||||||||||| | |||| ||||||||| | |||||||| ||||    
T  34566343 acaaagtgaagtctactagcttcaactcagctggaatgaggactcgtgtttaaaagggtatccccaaagcttcctt 34566268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 39332359 - 39332425
Alignment:
Q  121 caaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaa 187  Q
    ||||||||||||| || |||| ||||||| || ||||||||||| ||  ||||||||||||| ||||    
T  39332359 caaagtgaagcctgcttgctttaactcagccgaaatgaggacccgtgcccaaaagggtaccttcaaa 39332425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 26449737 - 26449532
Alignment:
Q  13 agttgaggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaag 112  Q
    ||||||||||||||||| | |||||| |||||||||||  | |||||| |||||||| ||| |||||||||| ||||||||||| | |||||||||||||    
T  26449737 agttgaggaagaggacaataatgaagtcatcacatcaa--tctgagcaacactatcctagtttgtcagagagcactaaggcagagagaaagcagaagaag 26449640  T
Q  113 caggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagt 212  Q
    |||||||||| |||||||||||||||||||| ||||| |||||||||||| | ||| |||||||||||||||||| |||||| | |||||||| ||||||    
T  26449639 caggtgaacagagtgaagcctactagcttcagctcagccggaatgaggactcgtgtccaaaagggtacctccaaaactgcctcgacatataccaaatagt 26449540  T
Q  213 tggttcaa 220  Q
    ||||||||    
T  26449539 tggttcaa 26449532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 19407954 - 19407870
Alignment:
Q  105 agaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaagc 189  Q
    ||||||||||||||||||||||||  ||| ||||||| ||||||| |||||||||||||| ||  ||||||||||||||||||||    
T  19407954 agaagaagcaggtgaacaaagtgattccttctagctttaactcagccggaatgaggacccgtgcccaaaagggtacctccaaagc 19407870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 187
Target Start/End: Original strand, 33191235 - 33191369
Alignment:
Q  53 tttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcg 152  Q
    |||||||||||||||||||  || || | ||| ||||| ||||| |||| | ||||||| || |||| ||||||||||||| ||||||| |||||||  |    
T  33191235 tttgagcagcactatccaaacctatcggggagcactaaagcagagaaaatgaagaagaaacatgtgagcaaagtgaagcctgctagctttaactcagctg 33191334  T
Q  153 gaatgaggacccatgttcaaaagggtacctccaaa 187  Q
      |||||||||| ||  || |||||||||| ||||    
T  33191335 acatgaggacccgtgcccagaagggtaccttcaaa 33191369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 25167810 - 25167967
Alignment:
Q  63 actatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggac 162  Q
    ||||||||||||| || || || ||||||||||| | |||| ||||||| || |||||||||||||||||| |||| || ||||||| ||||| ||||||    
T  25167810 actatccaagtctatctgaaagcactaaggcagagagaaagaagaagaaacatgtgaacaaagtgaagccttctagttttaactcagccggaaagaggac 25167909  T
Q  163 ccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggttcaa 220  Q
     ||||  |||||||||||||||||||| |||||| || |||| |||||||||||||||    
T  25167910 tcatgcccaaaagggtacctccaaagccgccttgacagatacagaatagttggttcaa 25167967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 4263563 - 4263365
Alignment:
Q  19 ggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtg 118  Q
    |||||||||| ||| ||| ||||||  ||||   ||||||| |||||||||||  || ||  |||| ||||||||||| ||||||   |||||||| ||     
T  4263563 ggaagaggacggtgttgatgccatcgtatcagactttgagcggcactatccaaacctttctaagagcactaaggcagagaaaaag---aagaagcatgta 4263467  T
Q  119 aacaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggttc 218  Q
    |||||| |||||||| |||| || ||||||| |||||||||||||| || |||||||||| ||||||||  || |||| || |||| |||||||||||||    
T  4263466 aacaaaatgaagcctgctagttttaactcagccggaatgaggacccgtgctcaaaagggttcctccaaaattgtcttggcagatacggaatagttggttc 4263367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 10989981 - 10990147
Alignment:
Q  53 tttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcg 152  Q
    |||||||||||||||||| ||   || ||||| ||||||||||  | |||| ||||| |||| | |||||||||||| ||| ||||||| |||| || ||    
T  10989981 tttgagcagcactatccatgtaaatctgagagcactaaggcagcgagaaagaagaagcagcaagagaacaaagtgaatccttctagctttaacttagccg 10990080  T
Q  153 gaatgaggacccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggttca 219  Q
     ||||||||| | ||  ||||||||| |||||||||||||| |  || ||||  |||||||||||||    
T  10990081 aaatgaggactcgtgcacaaaagggttcctccaaagctgccctaacagatacaaaatagttggttca 10990147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 220
Target Start/End: Original strand, 3949323 - 3949458
Alignment:
Q  85 aactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctcc 184  Q
    ||||||||||||   |||| ||||||| |||||||| |||||||||| |  ||| || |||| || | |||||||||| | |||||| ||||||||||||    
T  3949323 aactaaggcagagggaaagaagaagaaacaggtgaataaagtgaagctttttagttttaactgagccagaatgaggactcgtgttcagaagggtacctcc 3949422  T
Q  185 aaagctgccttgccatataccgaatagttggttcaa 220  Q
    ||||| |||||| || || | ||||||||| |||||    
T  3949423 aaagccgccttgacagatgcagaatagttgattcaa 3949458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 219
Target Start/End: Complemental strand, 16832303 - 16832137
Alignment:
Q  53 tttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcg 152  Q
    ||||||||||| | ||||| ||| ||  |||||||||||||||| | || | | |||||||| |||||||||||||||||||||| ||| |||||||| |    
T  16832303 tttgagcagcattgtccaactctttcttagagaactaaggcagagagaaggaataagaagcatgtgaacaaagtgaagcctactaactttaactcagttg 16832204  T
Q  153 gaatgaggacccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggttca 219  Q
    |||||||||| | ||||||||||||| |||||||||||| |||| || ||||  |||||| ||||||    
T  16832203 gaatgaggacacgtgttcaaaagggtgcctccaaagctgtcttggcagatacataatagtcggttca 16832137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 220
Target Start/End: Complemental strand, 24240003 - 24239839
Alignment:
Q  53 tttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcg 152  Q
    ||||||||||||||||||||||| || ||||| |||||||||   | ||||   |||||| ||||||| |||||||||||||||||||| ||||||| ||    
T  24240003 tttgagcagcactatccaagtctatctgagagcactaaggcatcgagaaag---aagaagtaggtgaataaagtgaagcctactagctttaactcagccg 24239907  T
Q  153 gaatgaggacccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggttcaa 220  Q
    |||||||||||| ||  |||||||||||||| ||||||  |||| || ||||  ||||||||| ||||    
T  24239906 gaatgaggacccgtgcccaaaagggtacctcaaaagctatcttggcagatacataatagttggctcaa 24239839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 37049967 - 37050125
Alignment:
Q  63 actatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcc-tactagcttcaactcagtcggaatgagga 161  Q
    ||||||||||||| || || || ||||||||||| |||||| ||||||| || ||||||||||||||||| | |||| || ||||||| |||||||||||    
T  37049967 actatccaagtctatctgaaagcactaaggcagagaaaaagaagaagaaacatgtgaacaaagtgaagcctttctagttttaactcagccggaatgagga 37050066  T
Q  162 cccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggttcaa 220  Q
    | | ||  |||||||||||||||||||| || |||  | ||||  ||||||||||||||    
T  37050067 ctcgtgcccaaaagggtacctccaaagccgctttgagagatacaaaatagttggttcaa 37050125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 12580028 - 12579947
Alignment:
Q  13 agttgaggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggca 94  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |||||||| | |||||||    
T  12580028 agttgaggaagaggacattaatgaagccatcacatcaacctttgagcagcactatccaagtctatcagagagcaataaggca 12579947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 19852407 - 19852576
Alignment:
Q  19 ggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtg 118  Q
    ||||||||||| || ||||||| ||| |||    |||||| | || ||||||||||| || ||||| ||||||||||| |||||| |||||||||| |||    
T  19852407 ggaagaggacaatgttgaagccctcatatctgactttgagaaacattatccaagtctatcggagagcactaaggcagagaaaaagaagaagaagcacgtg 19852506  T
Q  119 aacaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaag 188  Q
     ||||||||| |||| |||| || ||||||  ||||||||| |||| ||  |||||| ||| ||||||||    
T  19852507 cacaaagtgaggcctgctagttttaactcacccggaatgagaacccgtgcccaaaagagtaactccaaag 19852576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 16593966 - 16593766
Alignment:
Q  19 ggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtg 118  Q
    ||||||||||| || ||||||| ||| |||    |||||| | || ||||||||||| || ||||| ||||||||||| |||||| || ||||||| |||    
T  16593966 ggaagaggacaatgttgaagccctcatatctgactttgagaaacattatccaagtctatcggagagcactaaggcagagaaaaagaagtagaagcacgtg 16593867  T
Q  119 aacaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggttc 218  Q
     ||||||||| |||| |||| || |||| || ||||||||| |||| ||  |||||| ||| | |||||| || |||| ||  |||  ||||||||||||    
T  16593866 cacaaagtgaggcctgctagttttaacttagccggaatgagaacccgtgcccaaaagagtaacgccaaagttgtcttggcagctacataatagttggttc 16593767  T
Q  219 a 219  Q
    |    
T  16593766 a 16593766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 221
Target Start/End: Complemental strand, 27786950 - 27786782
Alignment:
Q  53 tttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcg 152  Q
    ||||||||||||||||||||||| || ||||| | |||||| || | |||| |||| |||||| |||| |||||||||||| ||||||| ||||||| ||    
T  27786950 tttgagcagcactatccaagtctatctgagagcaataaggcggagagaaagaagaataagcagatgaataaagtgaagccttctagctttaactcagccg 27786851  T
Q  153 gaatgaggacccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggttcaaa 221  Q
    ||||||||| || ||  ||||| ||| ||||||||||| ||||| || ||||  |||||||||||||||    
T  27786850 gaatgaggagccgtgcccaaaatggttcctccaaagctaccttgacagatacaaaatagttggttcaaa 27786782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 8831419 - 8831250
Alignment:
Q  19 ggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtg 118  Q
    ||||||||||| || ||||| | ||| ||||   |||||||| || ||||||||||| || ||||| ||||||||||| ||| || ||||||||||  ||    
T  8831419 ggaagaggacaatgttgaagacctcatatcagactttgagcaacattatccaagtctatctgagagcactaaggcagagaaagagaagaagaagcacatg 8831320  T
Q  119 aacaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaag 188  Q
    |||||||||| |||| ||||||| ||||||| |||||||||||||| || ||||||| ||| ||||||||    
T  8831319 aacaaagtgaggcctgctagctttaactcagccggaatgaggacccgtgctcaaaagtgtaactccaaag 8831250  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 36206583 - 36206440
Alignment:
Q  53 tttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcg 152  Q
    |||||||| |||| ||||||||| || ||||| || |||||||| | |||| ||||||||||  |||| |||||||||||| ||||||| |||| |||||    
T  36206583 tttgagcaacactttccaagtctatctgagagcaccaaggcagagagaaagaagaagaagcaaatgaataaagtgaagccttctagctttaacttagtcg 36206484  T
Q  153 gaatgaggacccatgttcaaaagggtacctccaaagctgccttg 196  Q
    |||||||||| | ||   ||||| || ||||||||| |||||||    
T  36206483 gaatgaggactcgtgcctaaaagagttcctccaaagttgccttg 36206440  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 216
Target Start/End: Original strand, 29369070 - 29369223
Alignment:
Q  63 actatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggac 162  Q
    ||||||||||||| || ||||| |||||| || | | |||| |||||||||| ||||| ||||||| |||| | ||||| |||| || | ||||||||||    
T  29369070 actatccaagtctatctgagagcactaagacaaagataaagaagaagaagcacgtgaataaagtgatgccttcaagctttaactgagccagaatgaggac 29369169  T
Q  163 ccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggt 216  Q
    || ||  ||||||| ||| |||||| | |||||| || |||| |||||||||||    
T  29369170 ccgtgcccaaaaggatacatccaaatccgccttggcagatacagaatagttggt 29369223  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 399916 - 399778
Alignment:
Q  20 gaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtga 119  Q
    |||||||||| |||||||||  ||| |||||  |||||||| |||||||| ||| | |  ||||| ||||||||||| | |||| ||||||| || ||||    
T  399916 gaagaggacaatgatgaagcactcatatcaaactttgagcaacactatccgagtttatatgagagcactaaggcagagagaaagaagaagaaacatgtga 399817  T
Q  120 acaaagtgaagcctactagcttcaactcagtcggaatga 158  Q
    ||||||||| |  | ||||||| || |||||||||||||    
T  399816 acaaagtgaggtttgctagctttaattcagtcggaatga 399778  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 28225910 - 28225739
Alignment:
Q  19 ggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtg 118  Q
    ||||||||||| || |||||||| ||  |||   ||||| || || ||||||||||| || ||||| ||||||| ||| | | |  |||||||||| |||    
T  28225910 ggaagaggacaatgttgaagccaacatttcatgctttgaacaacattatccaagtctatctgagagcactaaggtagagagagaaaagaagaagcatgtg 28225811  T
Q  119 aacaaagtgaagcctactagcttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaagct 190  Q
    | ||||||||||  |  || ||| ||||||| ||||||||||||   ||| ||||||| |||||| ||||||    
T  28225810 atcaaagtgaagtttgttaactttaactcagccggaatgaggacatgtgtccaaaaggatacctcaaaagct 28225739  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 221
Target Start/End: Original strand, 36868251 - 36868417
Alignment:
Q  55 tgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcgga 154  Q
    |||| ||||||||||||||   || ||||| | |||||  || | |||| |||||||||| ||||| |||||||||||| ||||||| ||||||| ||||    
T  36868251 tgagtagcactatccaagttaatctgagagcaataaggtggagagaaagaagaagaagcaagtgaataaagtgaagccttctagctttaactcagccgga 36868350  T
Q  155 atgaggacccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggttcaaa 221  Q
    |||||| ||| ||| ||||||||| ||||||||||| ||||| || ||||  |||||||||||||||    
T  36868351 atgagggcccgtgtccaaaagggttcctccaaagctaccttgacagatacataatagttggttcaaa 36868417  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 788428 - 788271
Alignment:
Q  63 actatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggac 162  Q
    ||||||||||||| |  ||||| | ||||||||| | |||| ||||||||||| |||||||| |||||||| ||| ||| ||||||| ||  ||||||||    
T  788428 actatccaagtctatttgagagcattaaggcagagagaaagaagaagaagcagatgaacaaaatgaagccttctaactttaactcagacgctatgaggac 788329  T
Q  163 ccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggttcaa 220  Q
     | ||  ||||||||| |||||||||| |||||| ||||||  ||||| |||||||||    
T  788328 tcgtgcccaaaagggttcctccaaagccgccttgacatatatagaataattggttcaa 788271  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 63 - 216
Target Start/End: Original strand, 19215349 - 19215502
Alignment:
Q  63 actatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggac 162  Q
    |||||||||| || |  ||||| |||||| |||| | || | |||||||||||||||||||||||| |||  ||||||| ||||||| | ||||||||||    
T  19215349 actatccaagcctatttgagagcactaagacagagagaatgaagaagaagcaggtgaacaaagtgatgccgtctagctttaactcagcccgaatgaggac 19215448  T
Q  163 ccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggt 216  Q
    ||  |  ||||||||||||| |||| |||||||| || |||| |||||||||||    
T  19215449 ccgagcccaaaagggtaccttcaaaactgccttggcagatacagaatagttggt 19215502  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 37307330 - 37307257
Alignment:
Q  53 tttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagt 126  Q
    |||||| ||||||||| ||||||||| ||||| ||||||| ||| | |||| |||||||||| |||||||||||    
T  37307330 tttgagtagcactatctaagtctgtctgagagcactaaggtagagagaaagaagaagaagcatgtgaacaaagt 37307257  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 36150721 - 36150641
Alignment:
Q  140 ttcaactcagtcggaatgaggacccatgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggttcaa 220  Q
    |||||||||| |||||||||||| | ||  ||||||| ||||||||||||| ||| | |||||||| ||||||||| ||||    
T  36150721 ttcaactcagccggaatgaggactcgtgcccaaaaggatacctccaaagctacctcggcatataccaaatagttggctcaa 36150641  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 15188023 - 15188131
Alignment:
Q  53 tttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcg 152  Q
    |||||||||||||||||||| || |  ||||| ||||| ||||| ||||   ||||||||||  ||| |||||||||||||  |||||| |||||||       
T  15188023 tttgagcagcactatccaagcctatatgagagcactaatgcagagaaaa---agaagaagcatatgagcaaagtgaagcctgatagctttaactcagcta 15188119  T
Q  153 gaatgaggaccc 164  Q
    ||||||||||||    
T  15188120 gaatgaggaccc 15188131  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 32278752 - 32278702
Alignment:
Q  170 caaaagggtacctccaaagctgccttgccatataccgaatagttggttcaa 220  Q
    |||||||||||||||||||| |||||| || |||| ||||||| |||||||    
T  32278752 caaaagggtacctccaaagccgccttgacagatacagaatagtgggttcaa 32278702  T

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Target: scaffold0531 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 65 - 219
Target Start/End: Original strand, 10228 - 10382
Alignment:
Q  65 tatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagtcggaatgaggaccc 164  Q
    ||||||||||| || ||||| ||||||||||| |||||| |||||||||| ||| ||||||||| |||| |||| || ||||||| ||||||||||||||    
T  10228 tatccaagtctatcggagagcactaaggcagagaaaaagaagaagaagcacgtgcacaaagtgaggcctgctagttttaactcagccggaatgaggaccc 10327  T
Q  165 atgttcaaaagggtacctccaaagctgccttgccatataccgaatagttggttca 219  Q
     ||   ||||| ||| ||||||||||| |||| ||  |||  |||||||||||||    
T  10328 gtgcctaaaagagtaactccaaagctgtcttggcagctacataatagttggttca 10382  T

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