View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12560_low_15 (Length: 272)
Name: NF12560_low_15
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12560_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 34261135 - 34261390
Alignment:
| Q |
1 |
agggtggtgtcataaatcaatttcttttttatggcaggttatcatatttgttgataactcaggtgcagatataattttaggtattttgccatttgcaagg |
100 |
Q |
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| T |
34261135 |
agggtggtgtcataaatcaatttcttttttatggcaggttatcatatttgttgataactcaggtgcagatataattttaggtattttgccatttgcaagg |
34261234 |
T |
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| Q |
101 |
gagctccttcggcgtgggagtcaggtttgcacacttaaatttatttgttgatttcattttgctttatatagaaattagagaaacttcaaattttataatt |
200 |
Q |
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| T |
34261235 |
gagctccttcggcgtgggaatcaggttcgcacacttaaatttatttgttgatttcattttgctttatatagaacttagagaaacttcaaattttataatt |
34261334 |
T |
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| Q |
201 |
tgttttaagaactttaattagatccactgaactcttatttgtagaagacatgattc |
256 |
Q |
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| T |
34261335 |
tgttttaagaactttaattagatccactgaacacttatttgtagaagacatgattc |
34261390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 34251232 - 34251376
Alignment:
| Q |
1 |
agggtggtgtcataaatcaatttcttttttatggcaggttatcatatttgttgataactcaggtgcagatataattttaggtattttgccatttgcaagg |
100 |
Q |
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||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34251232 |
agggtagtgtcataa-tcaatttctttttcatggcaggttatcatatttgttgataactcgggtgcagatataattttaggtattttgccatttgcaagg |
34251330 |
T |
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| Q |
101 |
gagctccttcggcgtgggagtcaggtttgcacacttaaatttattt |
146 |
Q |
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| T |
34251331 |
gagctccttcggcgtgggagtcaggtttgcacgcattaatttattt |
34251376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 34251639 - 34251741
Alignment:
| Q |
153 |
ttcattttgctttatatagaaattagagaaacttcaaattttataatttgttttaagaactttaattagatccactgaactcttatttgtagaagacatg |
252 |
Q |
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||||||| |||||||| ||| |||||| ||||||| ||||| |||||||||| ||| ||||||||||||| ||||||||||| |||||| |||||||| |
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| T |
34251639 |
ttcatttcgctttataaagatcttagaggaacttcagattttttaatttgttt-aagtactttaattagattaactgaactcttgtttgtaaaagacatg |
34251737 |
T |
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| Q |
253 |
attc |
256 |
Q |
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|||| |
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| T |
34251738 |
attc |
34251741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 20862103 - 20862008
Alignment:
| Q |
34 |
gcaggttatcatatttgttgataactcaggtgcagatataattttaggtattttgccatttgcaagggagctccttcggcgtgggagtcaggtttg |
129 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| || ||||| || ||||| ||||||||||||||||||||||| |
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| T |
20862103 |
gcaggttatcatatttgttgataactcaggtgctgatattattttgggtattttaccgtttgccagagagcttcttcggcgtgggagtcaggtttg |
20862008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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