View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12560_low_18 (Length: 255)
Name: NF12560_low_18
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12560_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 40684541 - 40684765
Alignment:
| Q |
1 |
tctgttctatttatcattaagctcttgataagactaaatgttccttcgtggttatttttatagaaaatatttttcccttctgggtgaaattactgaatct |
100 |
Q |
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| T |
40684541 |
tctgttctatttatcaataagctcttgataagactaaatgttccttcgtggttatttttatagaaaatatttttcccttctgggtgaaattactgaatct |
40684640 |
T |
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| Q |
101 |
caatacgagcacaacatattaacatttgaagttcactacaacttggttaaaatttatacctataatttgtcaccattttcaaaatgcagtacaattttcc |
200 |
Q |
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||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40684641 |
caacatgagcacaacatattaacatttgaagt--------------ttaaaatttatacctataatttgtcaccattttcaaaatgcagtacaattttcc |
40684726 |
T |
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| Q |
201 |
catcttcaataagtgactattttctttgatggcaggatc |
239 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
40684727 |
catcttgaataagtgactattttctttgatggcaggatc |
40684765 |
T |
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