View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12560_low_19 (Length: 249)
Name: NF12560_low_19
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12560_low_19 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 2 - 249
Target Start/End: Original strand, 28265215 - 28265462
Alignment:
| Q |
2 |
tcaaaaaagagtcaactaattcgagaaagttcccacttgagtattcacaacgtgaaccgtaattttcccgggaagatgacttcatcaaactatataagcc |
101 |
Q |
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| T |
28265215 |
tcaaaaaagagtcaactaattcgagaaagttcccacttgagcattcacaacgtgaaccgtaattttcccgggaagatgacttcatcaaactatataagcc |
28265314 |
T |
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| Q |
102 |
ctactctattcaatttttgaattttcagttagttacaatcacacacttcccgcgttccattccttctcctctcgcacttctctcttccacacaccgacga |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28265315 |
ctactctattcaatttttgaattttcagttagttacaatcacacacttcccgcgttccattccttctcctctcgcacttctctcttccacacaccgacga |
28265414 |
T |
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| Q |
202 |
atccttctgcatcttcttcctctctcaggtttctctctgcttctccac |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28265415 |
atccttctgcatcttcttcctctctcaggtttctctctccttctccac |
28265462 |
T |
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