View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12560_low_2 (Length: 579)

Name: NF12560_low_2
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12560_low_2
NF12560_low_2
[»] chr6 (9 HSPs)
chr6 (16-570)||(6723900-6724462)
chr6 (25-133)||(26545988-26546095)
chr6 (35-112)||(212003-212080)
chr6 (105-206)||(17533274-17533381)
chr6 (430-569)||(22000498-22000636)
chr6 (143-206)||(1929155-1929217)
chr6 (23-133)||(12311897-12312007)
chr6 (23-117)||(12283608-12283702)
chr6 (102-142)||(211943-211983)
[»] chr1 (8 HSPs)
chr1 (24-206)||(31183590-31183775)
chr1 (31-203)||(29488392-29488569)
chr1 (35-172)||(2136942-2137083)
chr1 (22-97)||(51273187-51273262)
chr1 (101-206)||(22790945-22791053)
chr1 (101-143)||(50709686-50709728)
chr1 (61-97)||(50461121-50461157)
chr1 (105-172)||(16123013-16123084)
[»] chr2 (11 HSPs)
chr2 (22-203)||(36925674-36925856)
chr2 (31-206)||(26352741-26352920)
chr2 (25-142)||(44986533-44986650)
chr2 (23-132)||(45388888-45388997)
chr2 (32-206)||(3353265-3353439)
chr2 (35-120)||(36525847-36525932)
chr2 (23-93)||(18858610-18858680)
chr2 (143-206)||(14749544-14749606)
chr2 (33-139)||(11457964-11458070)
chr2 (148-206)||(45389019-45389076)
chr2 (142-206)||(43344689-43344752)
[»] chr3 (17 HSPs)
chr3 (34-206)||(47014501-47014676)
chr3 (34-206)||(21853839-21854013)
chr3 (22-143)||(31489382-31489503)
chr3 (25-143)||(50387325-50387442)
chr3 (25-122)||(24611339-24611436)
chr3 (21-206)||(21842677-21842863)
chr3 (430-569)||(37983459-37983597)
chr3 (33-143)||(53530563-53530673)
chr3 (444-569)||(17688218-17688342)
chr3 (75-205)||(24121239-24121372)
chr3 (23-206)||(21858320-21858504)
chr3 (101-143)||(43471932-43471974)
chr3 (35-96)||(8913624-8913685)
chr3 (142-206)||(16343146-16343210)
chr3 (101-172)||(1341547-1341622)
chr3 (143-206)||(36172019-36172081)
chr3 (141-206)||(35433483-35433547)
[»] chr7 (7 HSPs)
chr7 (33-202)||(44797994-44798167)
chr7 (35-202)||(31396988-31397158)
chr7 (37-142)||(47277897-47278002)
chr7 (101-206)||(48138659-48138767)
chr7 (35-133)||(22201255-22201353)
chr7 (35-133)||(22236468-22236566)
chr7 (143-203)||(9229429-9229488)
[»] chr8 (10 HSPs)
chr8 (35-213)||(14180223-14180402)
chr8 (23-206)||(37231918-37232104)
chr8 (31-143)||(2813633-2813745)
chr8 (23-172)||(9136558-9136711)
chr8 (32-143)||(31431248-31431359)
chr8 (32-97)||(11558829-11558894)
chr8 (75-206)||(39297500-39297637)
chr8 (75-170)||(22470724-22470822)
chr8 (102-139)||(32579149-32579186)
chr8 (55-172)||(12006871-12006992)
[»] chr4 (11 HSPs)
chr4 (23-133)||(44746553-44746663)
chr4 (35-210)||(21619711-21619888)
chr4 (23-141)||(35823460-35823578)
chr4 (33-143)||(43770428-43770537)
chr4 (101-206)||(10632247-10632355)
chr4 (55-125)||(4775964-4776034)
chr4 (30-133)||(22198747-22198846)
chr4 (143-206)||(47724673-47724735)
chr4 (32-81)||(25204405-25204454)
chr4 (52-117)||(34733923-34733988)
chr4 (102-164)||(38947679-38947745)
[»] scaffold0001 (1 HSPs)
scaffold0001 (30-143)||(394312-394425)
[»] chr5 (9 HSPs)
chr5 (24-206)||(7732361-7732545)
chr5 (23-112)||(41634521-41634610)
chr5 (35-142)||(12848318-12848425)
chr5 (56-130)||(39329596-39329670)
chr5 (43-133)||(8802687-8802777)
chr5 (102-202)||(41634663-41634766)
chr5 (67-143)||(36906776-36906852)
chr5 (101-133)||(39700891-39700923)
chr5 (25-127)||(5836648-5836750)
[»] scaffold0051 (1 HSPs)
scaffold0051 (141-206)||(53789-53854)


Alignment Details
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 16 - 570
Target Start/End: Complemental strand, 6724462 - 6723900
Alignment:
Q  16 aagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaa 115  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  6724462 aagcaaagagagataggagattcaatcaataaataataaacaaactttgtattgagttcttttattgatgcatttgctgatactataacatacgaatgaa 6724363  T
Q  116 aatagaatatgatttatataa---------aaacttttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
    |||||||||| ||||||||||         |   |||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  6724362 aatagaatataatttatataatttttttttatttttttttatattttgattgcatgtattatttttctgtaaatgatggcttttatgattatatagtatt 6724263  T
Q  207 aaagggtcatcgatgccnnnnnnnnnccaagtatttcacctcacaaatgccaacatgtgaaattatgccaacatgtctttttaacttgattgtccataaa 306  Q
    ||||| ||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724262 aaaggatcatcgatgctttttttttttgaagtatttcacctcacaaatgccaacatgtgaaattatgccaacatgtctttttaacttgattgtccataaa 6724163  T
Q  307 aagaagagaagtgtccctaaaaacagttgtgattgtctctagaatatgatatgtcctatacataaataaatttctacatttttgctattcacaaagtaga 406  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724162 aagaagagaaatgtccctaaaaacagttgtgattgtctctagaatatgatatgtcctatacataaataaatttctacatttttgctattcacaaagtaga 6724063  T
Q  407 ttacatggttatcatttcttaattgaaaagaaaactaaagttgcacatgaggaaccaatcccaactacaccataagcttacttccatcttcaaatgtatg 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6724062 ttacatggttatcatttcttaattgaaaagaaaactaaagttgcacatgaggaaccaat-ccaactacaccataagcttacttccatcttcaaatgtatg 6723964  T
Q  507 ctaatatgccgttttacacaatttgtggtaacaaattcatagaagccaacccattcatctctgc 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6723963 ctaatatgccgttttacacaatttgtggtaacaaattcatagaagccaacccattcatctctgc 6723900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 26546095 - 26545988
Alignment:
Q  25 gagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaata 124  Q
    |||| ||||||||||||||||||||  |||||||| ||||| ||||||||||||| |||||  | ||||||||   |||||||||| |||||| | ||||    
T  26546095 gagaaaggagattcaatcaatcaattttaaacaaaatttgtcttgagttctttta-tgatgtttctgttgatatcctaacatatgattgaaaacataata 26545997  T
Q  125 tgatttata 133  Q
    |||||||||    
T  26545996 tgatttata 26545988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 212080 - 212003
Alignment:
Q  35 attcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaat 112  Q
    |||||||||||||| | |||||||||||||| || ||||||||||||||||  |||||||||| | ||||| ||||||    
T  212080 attcaatcaatcaacattaaacaaactttgtttttagttcttttattgatgtgtttgttgatattctaacagatgaat 212003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 206
Target Start/End: Complemental strand, 17533381 - 17533274
Alignment:
Q  105 atatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttct--gtaaatgatgacttttataattat 198  Q
    |||||||||||||||||||||||||||||  |||||||    |||| |||||||||| |||||||||||||| |   |||||  |||||||||| | |||    
T  17533381 atatgaatgaaaatagaatatgatttatacgaaaactttatattttttattttgatcacatgtattattttttttattaaattgtgacttttatgaatat 17533282  T
Q  199 atagtatt 206  Q
    ||||||||    
T  17533281 atagtatt 17533274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 569
Target Start/End: Original strand, 22000498 - 22000636
Alignment:
Q  430 tgaaaagaaaactaaagttgcacatgaggaaccaatcccaactacaccataagcttacttccatcttcaaatgtatgctaatatgccgttttacacaatt 529  Q
    |||||||||| |  |||||||||||||||||||||||| |||    |||||||||||||||||| |||| |||| | |||  | | | ||| || ||| |    
T  22000498 tgaaaagaaatccgaagttgcacatgaggaaccaatcc-aacattgccataagcttacttccatattcacatgtgttctatgaaggcatttaactcaact 22000596  T
Q  530 tgtggtaacaaattcatagaagccaacccattcatctctg 569  Q
    ||||||| | ||| |||||||||||| |||||||||||||    
T  22000597 tgtggtagctaatgcatagaagccaatccattcatctctg 22000636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 1929155 - 1929217
Alignment:
Q  143 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
    ||||||||||||||  |||||||||||||| |||||||   |||||||||||||||||||||||    
T  1929155 ttttatattttgattacatgtattattttt-tgtaaattgcgacttttataattatatagtatt 1929217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 12312007 - 12311897
Alignment:
Q  23 gagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaa 122  Q
    |||||| |||| ||||||| |||||| | ||||||||  |||| ||||||||||||  |||||| | | ||||||    |||||||||||| ||||| ||    
T  12312007 gagagagaggatattcaattaatcaacattaaacaaaacttgtgttgagttcttttgatgatgcttctattgatatcccaacatatgaatggaaataaaa 12311908  T
Q  123 tatgatttata 133  Q
    |||||||||||    
T  12311907 tatgatttata 12311897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 12283702 - 12283608
Alignment:
Q  23 gagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaa 117  Q
    |||||| |||||||||||| |||||| | ||| |||| ||||| |||| |||||||| |||||| | | ||||||    ||||||||||||||||    
T  12283702 gagagagaggagattcaattaatcaacattaatcaaaatttgtgttgaattcttttaatgatgcttctattgatatcccaacatatgaatgaaaa 12283608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 211983 - 211943
Alignment:
Q  102 aacatatgaatgaaaatagaatatgatttatataaaaactt 142  Q
    |||||||||||||||||| |||||||||||||  |||||||    
T  211983 aacatatgaatgaaaataaaatatgatttatacgaaaactt 211943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 5e-48; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 31183590 - 31183775
Alignment:
Q  24 agagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaat 123  Q
    ||||| |||| |||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||   ||||||||||| |||||||||||    
T  31183590 agagagaggaaattcaatcaatcaatattaaacaaactttgttttgagttcttctattgatacatttgttgatatcctaacatatgaaagaaaatagaat 31183689  T
Q  124 atgatttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
    ||||||||||| |||||||    |||| |||||||||  |||||||||||||| |||||||| |||||||||| |||||||||||||    
T  31183690 atgatttatatgaaaactttacattttttattttgattacatgtattattttt-tgtaaatggtgacttttatgattatatagtatt 31183775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 29488392 - 29488569
Alignment:
Q  31 ggagattcaatcaatcaatagtaaacaaactttgtattgagttctttt--attgatgcatttgttgatactataacatatgaatgaaaatagaatatgat 128  Q
    |||||||||||||||||| | |||||||||||||| ||||||||||||  |||||||||||||||||||   ||||||||||||||||||| ||||||||    
T  29488392 ggagattcaatcaatcaacattaaacaaactttgttttgagttctttttaattgatgcatttgttgatatcttaacatatgaatgaaaataaaatatgat 29488491  T
Q  129 ttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagt 203  Q
    |||||  |||||||    |||| |||||||||| |||| ||||||||| | |||||  |||||||||| ||| ||||||    
T  29488492 ttatacgaaaactttatattttttattttgatcacatgcattattttt-tctaaatcgtgacttttatcattttatagt 29488569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 35 - 172
Target Start/End: Original strand, 2136942 - 2137083
Alignment:
Q  35 attcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatat 134  Q
    |||||||||||||| | |||| ||||||||| |||| |||||||||| |||||||||||||||   |||||||||||||||||||||||||||||| ||     
T  2136942 attcaatcaatcaacattaaataaactttgttttgaattcttttattaatgcatttgttgatatcctaacatatgaatgaaaatagaatatgatttctac 2137041  T
Q  135 aaaaactt----ttttatattttgatcgcatgtattattttt 172  Q
     |||||||    |||| | |||||||| ||||||||||||||    
T  2137042 gaaaactttagattttttgttttgatcacatgtattattttt 2137083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 51273187 - 51273262
Alignment:
Q  22 agagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgata 97  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||    
T  51273187 agagagagaggagattcaatcaatcaatattaaacaaattttgttttgagttcttttattgatgcagttgttgata 51273262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 22791053 - 22790945
Alignment:
Q  101 taacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataatt 196  Q
    ||||||||||||||||||| |||||||||||||  |||||||    |||| |||||||||| |||||||||||||| |||||||  |||||||||| |||    
T  22791053 taacatatgaatgaaaataaaatatgatttatacgaaaactttaagttttttattttgatcacatgtattattttt-tgtaaattgtgacttttatgatt 22790955  T
Q  197 atatagtatt 206  Q
    ||||||||||    
T  22790954 atatagtatt 22790945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 50709686 - 50709728
Alignment:
Q  101 taacatatgaatgaaaatagaatatgatttatataaaaacttt 143  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  50709686 taacatatgaatgaaaatagaatatgatttatatgaaaacttt 50709728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 50461157 - 50461121
Alignment:
Q  61 tttgtattgagttcttttattgatgcatttgttgata 97  Q
    ||||| |||||||||||||||||||||||||||||||    
T  50461157 tttgttttgagttcttttattgatgcatttgttgata 50461121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 16123013 - 16123084
Alignment:
Q  105 atatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattttt 172  Q
    ||||||||||||||| |||||| ||||||  |||||||    |||| ||||||||||| |||||||||||||    
T  16123013 atatgaatgaaaatataatatggtttataagaaaactttacattttttattttgatcgaatgtattattttt 16123084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 8e-44; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 36925674 - 36925856
Alignment:
Q  22 agagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaataga 121  Q
    ||||||| ||||||||||||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||    
T  36925674 agagagagaggagattcaatcaatcaacattaaacaaactttgttttgagttcttttattgatgtatttgttgata-tctaacatgtgaatgaaaataga 36925772  T
Q  122 atatgatttatataaaaacttt---tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagt 203  Q
    ||||||||| ||  ||||||||   ||| |||||||||| |||||||||||||| |||||||  ||||||||||  |||||||||    
T  36925773 atatgatttttacgaaaactttacatttttattttgatcacatgtattattttt-tgtaaattgtgacttttatggttatatagt 36925856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 31 - 206
Target Start/End: Original strand, 26352741 - 26352920
Alignment:
Q  31 ggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataaca-tatgaatgaaaatagaatatgatt 129  Q
    |||||||||||||||||| | |||| |||| | || |||||||||||||  |||  |||||||||||   ||||| |||||||||||||| |||||||||    
T  26352741 ggagattcaatcaatcaacattaaataaacgtagttttgagttcttttaccgataaatttgttgatatcctaacattatgaatgaaaataaaatatgatt 26352840  T
Q  130 tatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
    ||||  |||||||    |||| |||||||||||| |||||||||||| ||||||| ||||||||||| ||| |||||||||    
T  26352841 tatacgaaaactttacattttttattttgatcgcttgtattattttt-tgtaaattatgacttttatgattttatagtatt 26352920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 44986533 - 44986650
Alignment:
Q  25 gagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaata 124  Q
    |||| ||||||||||||||||||| | |||||||||||||| ||| |||||||||||||||||||||||||||   ||| |||| | |||||||| ||||    
T  44986533 gagaaaggagattcaatcaatcaacattaaacaaactttgttttgggttcttttattgatgcatttgttgatatcttaatatataagtgaaaatataata 44986632  T
Q  125 tgatttatataaaaactt 142  Q
    |||||||||  |||||||    
T  44986633 tgatttatactaaaactt 44986650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 45388888 - 45388997
Alignment:
Q  23 gagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaa 122  Q
    |||||| | ||||||||||||||||| | |||||| ||||||| || |||||||||||||||||||||||| |||   ||||||||||||||||||| ||    
T  45388888 gagagagatgagattcaatcaatcaacattaaacatactttgttttaagttcttttattgatgcatttgttaatatcctaacatatgaatgaaaatataa 45388987  T
Q  123 tatgatttat 132  Q
    ||||||||||    
T  45388988 tatgatttat 45388997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 32 - 206
Target Start/End: Original strand, 3353265 - 3353439
Alignment:
Q  32 gagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgattta 131  Q
    ||||||| ||||||||| | |||||||||||||| ||||||||||||||| || ||||||||||||   |||||||||||||||||| | ||||||||||    
T  3353265 gagattcgatcaatcaacattaaacaaactttgttttgagttcttttattcatacatttgttgatatcctaacatatgaatgaaaattggatatgattta 3353364  T
Q  132 tataaaaactt---ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
    ||  |||||||     || |||||||||  ||||| |||||||| |||||||   ||||||||| |||||||||||||    
T  3353365 tacgaaaacttcacaattttattttgat--catgtgttattttt-tgtaaattgggacttttatgattatatagtatt 3353439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 36525932 - 36525847
Alignment:
Q  35 attcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatag 120  Q
    |||||||||||||||| |||||||| ||||| ||||||| |||||||||||||||||||||     ||| ||||||||||||||||    
T  36525932 attcaatcaatcaatattaaacaaattttgttttgagtttttttattgatgcatttgttgacgtcctaatatatgaatgaaaatag 36525847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 18858610 - 18858680
Alignment:
Q  23 gagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgtt 93  Q
    |||||| | ||||||||||||||||  | |||||||||||||| || | ||||||||||||||||||||||    
T  18858610 gagagagaagagattcaatcaatcagcattaaacaaactttgttttaaattcttttattgatgcatttgtt 18858680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 14749544 - 14749606
Alignment:
Q  143 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
    |||| |||||||||| |||||||||||||| ||||||| | ||||||||| |||||||||||||    
T  14749544 ttttttattttgatcacatgtattattttt-tgtaaatcacgacttttatgattatatagtatt 14749606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 11457964 - 11458070
Alignment:
Q  33 agattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttat 132  Q
    ||||| ||| |||||| | || ||||| ||||| ||| ||| ||||| |||||| | ||||||||  |||| ||||||||||||||| ||||| ||||||    
T  11457964 agatttaattaatcaacattagacaaaatttgtgttgcgttattttaatgatgcttatgttgatatcataatatatgaatgaaaatataatattatttat 11458063  T
Q  133 ataaaaa 139  Q
    || ||||    
T  11458064 atgaaaa 11458070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 45389019 - 45389076
Alignment:
Q  148 tattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
    |||||||||| |||||||||||||| |||||||  |||||||||| |||||||||||||    
T  45389019 tattttgatcacatgtattattttt-tgtaaattgtgacttttatgattatatagtatt 45389076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 43344752 - 43344689
Alignment:
Q  142 tttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
    ||||| |||||||||| |||||||||||||| ||| |||  |||||||||| |||||||||||||    
T  43344752 tttttttattttgatcacatgtattattttt-tgtgaattgtgacttttatgattatatagtatt 43344689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 47014501 - 47014676
Alignment:
Q  34 gattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 133  Q
    ||||||| ||||||| | ||||| |||||||| || ||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||||||     
T  47014501 gattcaaccaatcaacattaaacgaactttgtttttagttcttttattgatgcatttgttgatatcctaacatatgaatgaaaatcgaatatgatttatg 47014600  T
Q  134 taaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
      ||| |||    |||| ||||||||||||||||||||||||| ||||||| || |||||||| |||||||||||||    
T  47014601 cgaaatctttacattttttattttgatcgcatgtattattttt-tgtaaattataacttttatgattatatagtatt 47014676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 21853839 - 21854013
Alignment:
Q  34 gattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 133  Q
    ||||||||||||||| | |||| ||| ||||| | |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  21853839 gattcaatcaatcaacattaaataaaatttgtttagagttcttttattgatgcatttgttgatatcctaacatatgaatgaaaatagaatatgatttata 21853938  T
Q  134 taaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
      |  ||||     ||| ||||||||||  |||||||| ||||||||||||  |||||||||| |||||||||||||    
T  21853939 -gatcacttcacaatttttattttgatcatatgtatta-ttttctgtaaatcgtgacttttatgattatatagtatt 21854013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 31489503 - 31489382
Alignment:
Q  22 agagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaataga 121  Q
    |||||||||  ||||| |||||||||| | |||||||| ||||| ||||||||||||||||||||||||| |||||   ||||||||||||||||||| |    
T  31489503 agagagataatagatttaatcaatcaacattaaacaaattttgttttgagttcttttattgatgcatttgctgatatcttaacatatgaatgaaaataaa 31489404  T
Q  122 atatgatttatataaaaacttt 143  Q
    ||||||||||||  ||||||||    
T  31489403 atatgatttatacgaaaacttt 31489382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 50387325 - 50387442
Alignment:
Q  25 gagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaata 124  Q
    |||| ||||||||||||||||||| | |||||||||||| | | |||||| |||||||||| ||||||| ||| | |||||||| |||||||||||||||    
T  50387325 gagagaggagattcaatcaatcaacattaaacaaactttatct-gagttcctttattgatgtatttgttaatattctaacatataaatgaaaatagaata 50387423  T
Q  125 tgatttatataaaaacttt 143  Q
    |||||||||  ||||||||    
T  50387424 tgatttatacgaaaacttt 50387442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 24611436 - 24611339
Alignment:
Q  25 gagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaa 122  Q
    |||| ||||||||||||||||||| | |||||||||||  | ||||||||||||||||| ||||||||||||  | ||| |||||||| |||||||||    
T  24611436 gagagaggagattcaatcaatcaacattaaacaaacttgattttgagttcttttattgaagcatttgttgattttctaatatatgaataaaaatagaa 24611339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 21842677 - 21842863
Alignment:
Q  21 aagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatag 120  Q
    |||||||| |||| |||||||||||||| | |||| ||||||||| |  |||| ||||||||||| |||||||||||    ||| ||||||||||||||     
T  21842677 aagagagaaaggatattcaatcaatcaacattaaataaactttgtttatagtttttttattgatgtatttgttgatatccaaacttatgaatgaaaataa 21842776  T
Q  121 aatatgatttatataaaaacttt----tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
    ||||| |||| ||   | |||||     || |||||||||  ||||||||||||||| ||||||  |||||||||| |||||||||||||    
T  21842777 aatataatttttacgtagactttacaacttttattttgat--catgtattatttttc-gtaaatcgtgacttttatgattatatagtatt 21842863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 430 - 569
Target Start/End: Complemental strand, 37983597 - 37983459
Alignment:
Q  430 tgaaaagaaaactaaagttgcacatgaggaaccaatcccaactacaccataagcttacttccatcttcaaatgtatgctaatatgccgttttacacaatt 529  Q
    |||||||||| |  |||||||||||||||||||||||| |||    |||||||||||||||||| |||| |||| | |||  | | | ||| || ||| |    
T  37983597 tgaaaagaaatccgaagttgcacatgaggaaccaatcc-aacattgccataagcttacttccatattcacatgtgttctatgaaggcatttaactcaact 37983499  T
Q  530 tgtggtaacaaattcatagaagccaacccattcatctctg 569  Q
    ||||||||| ||| |||||||||||| |||||||||||||    
T  37983498 tgtggtaactaatgcatagaagccaatccattcatctctg 37983459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 53530673 - 53530563
Alignment:
Q  33 agattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttat 132  Q
    ||||||||| |||||||| |||||||| ||||| ||||||||||||| | || | | || | |||  |||| |||||||||||||| |||||||||||||    
T  53530673 agattcaattaatcaatattaaacaaaatttgtgttgagttcttttaataatacttctgctaatatcataagatatgaatgaaaatcgaatatgatttat 53530574  T
Q  133 ataaaaacttt 143  Q
    |  ||||||||    
T  53530573 acgaaaacttt 53530563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 444 - 569
Target Start/End: Complemental strand, 17688342 - 17688218
Alignment:
Q  444 aagttgcacatgaggaaccaatcccaactacaccataagcttacttccatcttcaaatgtatgctaatatgccgttttacacaatttgtggtaacaaatt 543  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||| |||| |||| | |||  | | | ||| || ||| |||||||||| |||     
T  17688342 aagttgcacatgaggaaccaatcc-aacattgccataagcttacttccatattcacatgtgttctatgaaggcatttaactcaacttgtggtaactaatg 17688244  T
Q  544 catagaagccaacccattcatctctg 569  Q
    |||||||||||| |||||||||||||    
T  17688243 catagaagccaatccattcatctctg 17688218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 205
Target Start/End: Original strand, 24121239 - 24121372
Alignment:
Q  75 ttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattt 170  Q
    |||||||||||||||||||||| |  ||| |||||||| ||||||||||||| |||||   |||| ||    ||||||||||||||  ||| ||||||||    
T  24121239 ttttattgatgcatttgttgattccctaatatatgaataaaaatagaatatgttttattcgaaaattttatattttatattttgataacatatattattt 24121338  T
Q  171 ttctgtaaatgatgacttttataattatatagtat 205  Q
    ||  ||||||  |||||||||| ||||||||||||    
T  24121339 tt-ggtaaattgtgacttttatgattatatagtat 24121372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 21858320 - 21858504
Alignment:
Q  23 gagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaa 122  Q
    |||||| |||| |||||||||||||| | |||| ||||||||| |   ||| ||||||||||| | |||||||||    ||| |||||||||||||||||    
T  21858320 gagagagaggatattcaatcaatcaacattaaataaactttgtttattgtttttttattgatgtagttgttgatatccaaacttatgaatgaaaatagaa 21858419  T
Q  123 tatgatttatataaaaacttt----tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
    ||| |||| ||   | |||||     || |||||||||  ||||||||||||||| ||||||  |||||||||| |||||||||||||    
T  21858420 tataatttttacgtagactttacaacttttattttgat--catgtattatttttc-gtaaatcgtgacttttatgattatatagtatt 21858504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 43471932 - 43471974
Alignment:
Q  101 taacatatgaatgaaaatagaatatgatttatataaaaacttt 143  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  43471932 taacatatgaatgaaaatagaatatgatttatatgaaaacttt 43471974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 8913624 - 8913685
Alignment:
Q  35 attcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgat 96  Q
    |||||||||||||| |  ||| ||||||||| ||||||| ||||||||||||||||||||||    
T  8913624 attcaatcaatcaacataaaataaactttgttttgagtttttttattgatgcatttgttgat 8913685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 16343146 - 16343210
Alignment:
Q  142 tttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
    ||||| |||||||||| |||||||||||||| |||||||   ||||||||| |||||||||||||    
T  16343146 tttttttattttgatcacatgtattatttttttgtaaattgcgacttttatgattatatagtatt 16343210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 1341622 - 1341547
Alignment:
Q  101 taacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattttt 172  Q
    ||||||||||||||||||| |||||| ||||||| |||||||    |||| |||||||||| | ||||||||||||    
T  1341622 taacatatgaatgaaaataaaatatgttttatatgaaaactttacattttttattttgatcacgtgtattattttt 1341547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 36172081 - 36172019
Alignment:
Q  143 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
    |||| |||||||||| |||||||||||||| |||||||   ||||||||| |||||||||||||    
T  36172081 ttttttattttgatcacatgtattattttt-tgtaaattgcgacttttatgattatatagtatt 36172019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 35433483 - 35433547
Alignment:
Q  141 ttttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
    |||||| |||||||||| |||||||||||||| |||||||   || |||||| |||||||||||||    
T  35433483 ttttttttattttgatcacatgtattattttt-tgtaaatcgcgatttttatgattatatagtatt 35433547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 44798167 - 44797994
Alignment:
Q  33 agattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttat 132  Q
    ||||||||||||||||   |||| ||||||||| |||||||||||||||||  ||||||||||||   ||||||||||||||||||| ||||||||||||    
T  44798167 agattcaatcaatcaacgttaaataaactttgttttgagttcttttattgaaacatttgttgatatcctaacatatgaatgaaaatataatatgatttat 44798068  T
Q  133 ataaaaacttt----tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatag 202  Q
    |  ||||||||    ||| |||||||||| |||||||| ||||| |||||||  |||||||||| |||||||||    
T  44798067 acgaaaactttacaatttttattttgatcacatgtattttttttttgtaaattgtgacttttatgattatatag 44797994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 35 - 202
Target Start/End: Complemental strand, 31397158 - 31396988
Alignment:
Q  35 attcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatat 134  Q
    |||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||    ||||||| ||| |||||| ||||||||||||||    
T  31397158 attcaatcaatcaacattaaacaaactttgttttgagttcttttattgatgcatttgttgatatcccaacatataaataaaaataaaatatgatttatat 31397059  T
Q  135 aaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatag 202  Q
     |||| ||    |||| |||||||||| || |||||| |||| |||||||  |||||||||| |||||||||    
T  31397058 gaaaattttatattttttattttgatcacaagtattactttt-tgtaaattgtgacttttatgattatatag 31396988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 47277897 - 47278002
Alignment:
Q  37 tcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataa 136  Q
    |||||||||||| | ||| |||||||||| |||| |||||||||||| |||||||||||||   ||| |||||| ||||||||||| || ||||||| ||    
T  47277897 tcaatcaatcaacattaatcaaactttgttttgaattcttttattgaagcatttgttgatatcctaatatatgagtgaaaatagaaaattatttatacaa 47277996  T
Q  137 aaactt 142  Q
    ||||||    
T  47277997 aaactt 47278002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 48138659 - 48138767
Alignment:
Q  101 taacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataatt 196  Q
    ||||||||||| ||||||| |||||||||||||  |||||||    |||| |||||||||| ||| |||||||||| |||||||  ||| |||||| |||    
T  48138659 taacatatgaacgaaaatataatatgatttatacgaaaactttacattttttattttgatcacatatattattttt-tgtaaattgtgaattttatgatt 48138757  T
Q  197 atatagtatt 206  Q
    ||||||||||    
T  48138758 atatagtatt 48138767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 22201255 - 22201353
Alignment:
Q  35 attcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 133  Q
    ||||||| ||||||||||| ||||| ||||| ||||| | ||||| |||| | | || ||||| | |||  |||||||||||||| |||||||||||||    
T  22201255 attcaattaatcaatagtagacaaaatttgtgttgagctattttaatgatacttctgctgatattctaatgtatgaatgaaaatataatatgatttata 22201353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 22236566 - 22236468
Alignment:
Q  35 attcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 133  Q
    ||||||| ||||||||||| ||||| ||||| ||||| | ||||| |||| | | || ||||| | |||  |||||||||||||| |||||||||||||    
T  22236566 attcaattaatcaatagtagacaaaatttgtgttgagctattttaatgatacttctgctgatattctaatgtatgaatgaaaatataatatgatttata 22236468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 9229488 - 9229429
Alignment:
Q  143 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagt 203  Q
    |||| |||||||||| |||||||||||||| |||||||   ||||||||| ||||||||||    
T  9229488 ttttttattttgatcacatgtattattttt-tgtaaatcgcgacttttatgattatatagt 9229429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 35 - 213
Target Start/End: Original strand, 14180223 - 14180402
Alignment:
Q  35 attcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatat 134  Q
    |||||||||||||| | ||||||||||||||  ||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||||||||||     
T  14180223 attcaatcaatcaacattaaacaaactttgt--tgagttcttttattgatgcatttgttgatatcctaacttatgaatgaaaatagaatatgatttatac 14180320  T
Q  135 aaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtattaaagggt 213  Q
     |||| ||    | || |||||||||| |||| ||||||||| |||||||  |||||||||| |||| |||||||| ||||||    
T  14180321 gaaaaatttacatattttattttgatcacatgcattattttt-tgtaaattgtgacttttatgattaaatagtattgaagggt 14180402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 37231918 - 37232104
Alignment:
Q  23 gagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaa 122  Q
    |||||| |||| ||| ||| |||||| | |||||||||||||| |||||||||||||||||||||||||||||||   |||||||| |||||||||||||    
T  37231918 gagagaaaggaaattaaattaatcaacattaaacaaactttgttttgagttcttttattgatgcatttgttgatatcctaacatataaatgaaaatagaa 37232017  T
Q  123 tatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
    |||||||||||  |||| ||    |||| || ||||||| ||| |||||||||| |||||||  ||||||||||  ||||||||||||    
T  37232018 tatgatttatacgaaaaatttacattttttactttgatcacatatattattttt-tgtaaattgtgacttttatgcttatatagtatt 37232104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 31 - 143
Target Start/End: Complemental strand, 2813745 - 2813633
Alignment:
Q  31 ggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgattt 130  Q
    ||||||| |||||||||| | |||||||||||||| ||||||||||||||||||  |||||||||||   ||||||||||||||||||||||||||||||    
T  2813745 ggagatttaatcaatcaacattaaacaaactttgttttgagttcttttattgatatatttgttgatatcctaacatatgaatgaaaatagaatatgattt 2813646  T
Q  131 atataaaaacttt 143  Q
    ||| |||||||||    
T  2813645 atacaaaaacttt 2813633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 23 - 172
Target Start/End: Complemental strand, 9136711 - 9136558
Alignment:
Q  23 gagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaa 122  Q
    |||||| | |||||||||| ||| || | |||| ||| ||| | |||| |||| |||||||||||||||||||||  |||||||||||||||||||||||    
T  9136711 gagagagatgagattcaataaattaacaataaataaattttattttgaattctcttattgatgcatttgttgatatcataacatatgaatgaaaatagaa 9136612  T
Q  123 tatgatttatataaaaactt----ttttatattttgatcgcatgtattattttt 172  Q
    |||||||||||  |||| ||    |||| |||||||||| |||||||| |||||    
T  9136611 tatgatttatacgaaaattttacattttttattttgatcacatgtatttttttt 9136558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 31431359 - 31431248
Alignment:
Q  32 gagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgattta 131  Q
    |||||||||  |||||| | || ||||| ||||| ||||||||||||| |||||  | ||| ||||   ||||||||||||||||||| |||||||||||    
T  31431359 gagattcaaataatcaagattagacaaaatttgtgttgagttcttttaatgatgtttctgtggatatcttaacatatgaatgaaaatataatatgattta 31431260  T
Q  132 tataaaaacttt 143  Q
    ||| ||||||||    
T  31431259 tatgaaaacttt 31431248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 11558829 - 11558894
Alignment:
Q  32 gagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgata 97  Q
    |||||||||| |||||| | |||||||| ||||| |||| ||||||||||| ||||||||||||||    
T  11558829 gagattcaattaatcaacattaaacaaattttgttttgatttcttttattgttgcatttgttgata 11558894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 206
Target Start/End: Complemental strand, 39297637 - 39297500
Alignment:
Q  75 ttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattt 170  Q
    |||||||||| ||||||||||||   ||| |||| |||||||||| ||||| || | || ||||||||    |||| ||||||||||  |||||||||||    
T  39297637 ttttattgatacatttgttgatatcctaatatataaatgaaaataaaatataatgtttacaaaaactttaaattttttattttgatcatatgtattattt 39297538  T
Q  171 tt--ctgtaaatgatgacttttataattatatagtatt 206  Q
    ||   |||||||  |||||||||| |||||||||||||    
T  39297537 tttgttgtaaattgtgacttttatgattatatagtatt 39297500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 22470724 - 22470822
Alignment:
Q  75 ttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt---tttatattttgatcgcatgtattattt 170  Q
    ||||| |||||  ||||||||||   |||||||  |||||| |||||||||||||||||  ||||||||   ||| |||||||||| ||||||||||||    
T  22470724 ttttaatgatgtttttgttgatatcctaacatagaaatgaatatagaatatgatttatacgaaaactttatatttttattttgatcacatgtattattt 22470822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 32579149 - 32579186
Alignment:
Q  102 aacatatgaatgaaaatagaatatgatttatataaaaa 139  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  32579149 aacatatgaaagaaaatagaatatgatttataaaaaaa 32579186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 12006871 - 12006992
Alignment:
Q  55 acaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt----tttatat 150  Q
    ||||| ||||| | ||||||||||| | |||| ||| ||||||    ||||||||||| |||||| |||||  ||||||  ||||||||    ||| |||    
T  12006871 acaaaatttgtgtagagttcttttaattatgcttttcttgatatcccaacatatgaataaaaatataatatagtttataagaaaactttacattttttat 12006970  T
Q  151 tttgatcgcatgtattattttt 172  Q
    ||||||| ||||||||||||||    
T  12006971 tttgatcacatgtattattttt 12006992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 44746553 - 44746663
Alignment:
Q  23 gagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaa 122  Q
    |||||| ||||||||||||||| ||| | |||||||||||||| ||||||| |||||||||||||||||||||||   ||| ||||||||||||||| ||    
T  44746553 gagagagaggagattcaatcaaccaacattaaacaaactttgttttgagtttttttattgatgcatttgttgatatcctaagatatgaatgaaaataaaa 44746652  T
Q  123 tatgatttata 133  Q
    |||||||||||    
T  44746653 tatgatttata 44746663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 210
Target Start/End: Original strand, 21619711 - 21619888
Alignment:
Q  35 attcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatat 134  Q
    |||||||||||||| | ||||||||||||   ||||||| |||||||||||||  |||| |||   |||||||||||| |||||||||| || ||||       
T  21619711 attcaatcaatcaacattaaacaaacttttatttgagttattttattgatgcacgtgttaatatcctaacatatgaataaaaatagaatgtgtttta-cg 21619809  T
Q  135 aaaaactt---ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtattaaag 210  Q
    ||||  ||   ||||||||||||||| |||||||||||||| |||  ||  |||||||||| ||| ||||||| |||||    
T  21619810 aaaattttatattttatattttgatcacatgtattatttttttgtcgattgtgacttttatgattgtatagtaataaag 21619888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 35823578 - 35823460
Alignment:
Q  23 gagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaa 122  Q
    |||||| | |||||||||| |||||| | || ||||| ||||| ||||||||||||| |||  | | | ||||||   ||||||||||||||||||| ||    
T  35823578 gagagagaagagattcaattaatcaacattatacaaaatttgtgttgagttcttttaatgacacttctattgatatcctaacatatgaatgaaaataaaa 35823479  T
Q  123 tatgatttatataaaaact 141  Q
    ||||||||||| |||||||    
T  35823478 tatgatttataaaaaaact 35823460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 43770537 - 43770428
Alignment:
Q  33 agattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttat 132  Q
    |||||||||||||||| | ||||||||||| || ||||||| ||||||| ||| |||||||||||   |||| ||||||  | |||||||||||||||||    
T  43770537 agattcaatcaatcaacattaaacaaactt-gttttgagttattttattaatgaatttgttgatatcctaacgtatgaaatataatagaatatgatttat 43770439  T
Q  133 ataaaaacttt 143  Q
    |  ||||||||    
T  43770438 acgaaaacttt 43770428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 10632247 - 10632355
Alignment:
Q  101 taacatatgaatgaaaatagaatatgatttatataaaaacttt----tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataatt 196  Q
    ||||||||||||||||||| |||||||||||||  ||||||||    |||  ||||||||| |||||||||||||| |||||||  |||| ||||| |||    
T  10632247 taacatatgaatgaaaataaaatatgatttatacgaaaactttacatttttaattttgatcacatgtattattttt-tgtaaattgtgacatttatgatt 10632345  T
Q  197 atatagtatt 206  Q
    ||||| ||||    
T  10632346 atataatatt 10632355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 4775964 - 4776034
Alignment:
Q  55 acaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatat 125  Q
    ||||| ||||| ||||||||||| | |||||| | |||||||| ||||||||||| ||||||||| |||||    
T  4775964 acaaaatttgtgttgagttctttcaatgatgcttatgttgatattataacatatggatgaaaatataatat 4776034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 22198846 - 22198747
Alignment:
Q  30 aggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatt 129  Q
    |||||||||| |||||||| | |||||||||||||| |||||||||    || |  ||||||||||||   |||||||| ||||||||||  ||||||||    
T  22198846 aggagattcagtcaatcaacattaaacaaactttgttttgagttct----ttaacacatttgttgatatcctaacatataaatgaaaatacgatatgatt 22198751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 47724735 - 47724673
Alignment:
Q  143 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
    |||| |||||||||| |||||||||||||| |||||||   ||||||||| |||||||||||||    
T  47724735 ttttttattttgatcacatgtattattttt-tgtaaattgcgacttttatgattatatagtatt 47724673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 25204454 - 25204405
Alignment:
Q  32 gagattcaatcaatcaatagtaaacaaactttgtattgagttcttttatt 81  Q
    ||||||||||||||||| | |||||||| ||||| |||| ||||||||||    
T  25204454 gagattcaatcaatcaacattaaacaaaatttgttttgaattcttttatt 25204405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 34733923 - 34733988
Alignment:
Q  52 taaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaa 117  Q
    |||||||| ||||| || |||  |||||||||||||||| ||||||   |||||||||||||||||    
T  34733923 taaacaaaatttgttttaagtgtttttattgatgcatttattgatatcctaacatatgaatgaaaa 34733988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 38947745 - 38947679
Alignment:
Q  102 aacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgta 164  Q
    |||||||||||||||||||||||| |||||||  |||| ||    ||||||||||||||| ||||||    
T  38947745 aacatatgaatgaaaatagaatataatttatacgaaaattttatattttatattttgatcacatgta 38947679  T

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Target: scaffold0001 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 394312 - 394425
Alignment:
Q  30 aggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatt 129  Q
    ||||||||||||||||||| | |||||||| ||||| |||||||||| ||||||| ||||||||||||| |||||||| |||| |||||| |||| ||||    
T  394312 aggagattcaatcaatcaacattaaacaaattttgttttgagttcttgtattgatccatttgttgataccataacataagaattaaaatataatacgatt 394411  T
Q  130 tatataaaaacttt 143  Q
    ||||  ||||||||    
T  394412 tatacgaaaacttt 394425  T

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Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 7732361 - 7732545
Alignment:
Q  24 agagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaat 123  Q
    ||||| |||||||| |||||||||| |  |||||||||| || || ||||||||||||||||||||| |||||| | ||||||||||||||||||| |      
T  7732361 agagagaggagatttaatcaatcaacatgaaacaaacttcgttttaagttcttttattgatgcatttattgatattctaacatatgaatgaaaatata-- 7732458  T
Q  124 atgatttatataaaa-----acttttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
    |||||||||| ||||     || ||||| |||||||| | ||  |||||||||| | |||||  |||||||||| |||||||||||||    
T  7732459 atgatttatacaaaaaatttacatttttttattttgaccacacatattattttt-tataaattgtgacttttatgattatatagtatt 7732545  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 41634521 - 41634610
Alignment:
Q  23 gagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaat 112  Q
    |||||| |||| |||||||||||||| | |||||||||||| | || |||||||||||||||||||||||||||| | ||||||||||||    
T  41634521 gagagagaggacattcaatcaatcaacattaaacaaactttatttttagttcttttattgatgcatttgttgatattctaacatatgaat 41634610  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 12848425 - 12848318
Alignment:
Q  35 attcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatat 134  Q
    ||||||||||| || | |||||||||||||| |||||||| |||||||||| ||||||||||    ||| |||||||| |||||||||||| |||||||     
T  12848425 attcaatcaattaacattaaacaaactttgttttgagttcctttattgatgtatttgttgatgtcctaatatatgaataaaaatagaatataatttatac 12848326  T
Q  135 aaaaactt 142  Q
     |||||||    
T  12848325 gaaaactt 12848318  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 39329596 - 39329670
Alignment:
Q  56 caaactttgtattgagttcttttattgatgcatttgttgata-ctataacatatgaatgaaaatagaatatgattt 130  Q
    |||||||||| |||| ||||||||| |||||||||||||||| ||| || ||||||||||||||||||||| ||||    
T  39329596 caaactttgttttgaattcttttatcgatgcatttgttgatatcta-aatatatgaatgaaaatagaatataattt 39329670  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 8802777 - 8802687
Alignment:
Q  43 aatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 133  Q
    |||||||| |||||||| ||||| ||||||||||||  |||||| | | ||||||   |||||||||||| |||||| |||||||||||||    
T  8802777 aatcaatattaaacaaaatttgtgttgagttcttttgatgatgcttctattgatatcctaacatatgaataaaaatataatatgatttata 8802687  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 41634663 - 41634766
Alignment:
Q  102 aacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataatta 197  Q
    ||||||||||||||||||||||||||||||||  ||||| |    |||| | |||||||| |||||||| || || | ||||| ||||||||||| ||||    
T  41634663 aacatatgaatgaaaatagaatatgatttatacgaaaacattacattttttgttttgatcacatgtatt-ttcttttttaaattatgacttttatgatta 41634761  T
Q  198 tatag 202  Q
    |||||    
T  41634762 tatag 41634766  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 36906776 - 36906852
Alignment:
Q  67 ttgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt 143  Q
    ||||||||||||| | |||  ||||||||||   ||||| ||||||||||||| |||||| ||||||| ||||||||    
T  36906776 ttgagttcttttaataatgtttttgttgatatcctaacaaatgaatgaaaatataatatgctttatatgaaaacttt 36906852  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 39700923 - 39700891
Alignment:
Q  101 taacatatgaatgaaaatagaatatgatttata 133  Q
    |||||||||||||||||||||||||||||||||    
T  39700923 taacatatgaatgaaaatagaatatgatttata 39700891  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 5836648 - 5836750
Alignment:
Q  25 gagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaata 124  Q
    |||| |||||||||||| |||||  | || | ||| ||||| ||||||||||||| |||||| | ||||||||   |||||| ||||||||| || ||||    
T  5836648 gagagaggagattcaattaatcaccattagataaaatttgtgttgagttcttttaatgatgcttatgttgatatcctaacatctgaatgaaagtacaata 5836747  T
Q  125 tga 127  Q
    |||    
T  5836748 tga 5836750  T

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Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 53789 - 53854
Alignment:
Q  141 ttttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 206  Q
    |||||| |||||||||| |||||||||||||| |||||||   ||||||||| |||||||||||||    
T  53789 ttttttttattttgatcacatgtattatttttttgtaaattgcgacttttatgattatatagtatt 53854  T

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