View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12560_low_20 (Length: 249)
Name: NF12560_low_20
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12560_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 40684372 - 40684134
Alignment:
| Q |
1 |
tccgcatattgtccactttggcaaaacgaagtatatggatttgaaaatgtgtgtgaaagtatacaaactagctggtccttaaaaatatcaaccacaagaa |
100 |
Q |
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| T |
40684372 |
tccgcatattgtccactttggcaaaacgaagtatatggatttgaaaatgtgtgtgaaagtatacaaactagctggtccttaaaaatatcaaccacaagaa |
40684273 |
T |
|
| Q |
101 |
aaaatacggaaaatcattattggagcagatgccgtaaactacaacaaaagaatttatattttacttctattcagattctatcaaaatagttgtcaaaaag |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40684272 |
aaaatacggaaaatcattattggcgcagatgccgtaaactacaacaaaagaatttatattttacttctattcagattctatcaaaatagttgtcaaaaag |
40684173 |
T |
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| Q |
201 |
atataaatacctgcaagctagcatcaagtctgctctctg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
40684172 |
atataaatacctgcaagctagcatcaagtctgctctctg |
40684134 |
T |
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