View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12560_low_24 (Length: 240)
Name: NF12560_low_24
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12560_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11424921 - 11425146
Alignment:
| Q |
1 |
ttcagattttgtttgtgttgattgattaactattgtgtagtggaatctaaatccgttgttcaattacaaagtgttttcaaagatcaaaataattggtttt |
100 |
Q |
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| T |
11424921 |
ttcagattttgtttgtgttgattgattaactattgtgtagtggaatctaaattggttgttcaattacaaagtgttttcaaagatcaaaataattggtttt |
11425020 |
T |
|
| Q |
101 |
-aatagtatttcatgaactttttactcatttacaaaattatt--tatttcaaatgagttgtaagtccatccagtagtaaacaagcatatgaaagcttacc |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11425021 |
aaatagtatttcatgaactttttactcatttacaaaattatttatatttcaaatgagttgtaagtccatccagtagtaaacaagcatatgaaagcttacc |
11425120 |
T |
|
| Q |
198 |
aatcaatcaaaatgaaaattcaactc |
223 |
Q |
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|||||||||||||||||||||||||| |
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| T |
11425121 |
aatcaatcaaaatgaaaattcaactc |
11425146 |
T |
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