View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12560_low_26 (Length: 229)
Name: NF12560_low_26
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12560_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 6080300 - 6080494
Alignment:
| Q |
17 |
agtatgacagtatcattaaattttaagcatgtgatggttgcgtagttacttaaggtccagggtacataaactggtggtagatgagtgtcttgtgttctac |
116 |
Q |
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| T |
6080300 |
agtatgacagtatcattaaattttaagcatgtgatggttgcgtagttacttaaggtccagggtacataaactggtggtagatgagtgtcttgtgttctac |
6080399 |
T |
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| Q |
117 |
ttggtcaaatgacacatgttgttgattcaaacatgacacagtagtaagatgcaaatactgccaaaccgacactttcccctccccatctctcccccttt |
214 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
6080400 |
ttggtcaaatgacaca---tgttgattcaaacatgacacagtagtatgatgcaaatacagccaaaccgacactttcccctccctatctctcccccttt |
6080494 |
T |
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