View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12560_low_3 (Length: 555)
Name: NF12560_low_3
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12560_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 483; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 18 - 545
Target Start/End: Original strand, 8945282 - 8945809
Alignment:
| Q |
18 |
atgcttcccatcctgccatgtgatgtaaccaaaagctacttcattattttgtgtcattctagggccttcaatcctcaacttgtagcttagcatctcattc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8945282 |
atgcttcccatcctgccatgtgatgtaaccaaaagctacttcattattttgtgtcattctagggccttcaatcctcaacttgtagcttagcatctcattc |
8945381 |
T |
|
| Q |
118 |
ttcttattgaacatcaacttatttgggataacactaacacggtatccttcaacaggcgtaatgctagcaacataaatggcttgtccctcaccaacattgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8945382 |
ttcttattgaacatcaacttatttgggatagcactaacacggtatccttcaacaggcataatgctagcaacataaatggcttgtccctcaccaacattgg |
8945481 |
T |
|
| Q |
218 |
taactgttctgtgaaattcttggatggcccttgaagaagaatttccagcattgaaaaaagctataaaagaagggtaattaagatccaaggaaggtttaga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8945482 |
taactgttctgtgaaattcttggatggcccttgaagaagaatttccagcattgaaaaaagctataaaagaagggtaattaagatccaaggaaggtttaga |
8945581 |
T |
|
| Q |
318 |
acaatcattgaaagaggatcttgtaatcgtagtgatgnnnnnnngtgtgaagttaagtgcacaaagaagattaacataatcttgtacaccaacatcataa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8945582 |
acaatcattgaaagaggatcttgtaatcgtagtgatgtttttttgtgtgaagttaagtgcacaaagaagattaacataatcttgtacaccaacatcataa |
8945681 |
T |
|
| Q |
418 |
acaagaccagggtcaagtgctctattgggatcaacataaccagctcccaatgcaagaggagttgcaacttcattatctttcccaatgtctttgatatgtt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
8945682 |
acaagaccagggtcaagtgctctattgggatcaacataaccagctcccaatgcaagaggagttgcaacttcattacctttttcaatgtctttgatatgtt |
8945781 |
T |
|
| Q |
518 |
ccttggtattatcatatatgtttgatgt |
545 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
|
|
| T |
8945782 |
ccttagtattatcatatatgtttgatgt |
8945809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 83 - 531
Target Start/End: Complemental strand, 8958723 - 8958275
Alignment:
| Q |
83 |
cttcaatcctcaacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggataacactaacacggtatccttcaacaggcgtaatgct |
182 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||| | |||||| |||||||||||||| ||| || | |||||||| | |||||||| |
|
|
| T |
8958723 |
cttcaatcctcaacttgtagcttagtttctcattcttctcattgaataccaacttgtttgggataacactgacatggaacccttcaacctgagtaatgct |
8958624 |
T |
|
| Q |
183 |
agcaacataaatggcttgtccctcaccaacattggtaactgttctgtgaaattcttggatggcccttgaagaagaatttccagcattgaaaaaagctata |
282 |
Q |
| |
|
|| |||||||| | || |||||||||||||||||||| |||||| |||||||||||| | | ||||||||||||||| ||| || ||| || || ||| |
|
|
| T |
8958623 |
agaaacataaactgtttctccctcaccaacattggtaattgttctatgaaattcttgggttgtccttgaagaagaattcccattatcgaagaatgcaata |
8958524 |
T |
|
| Q |
283 |
aaagaagggtaattaagatccaaggaaggtttagaacaatcattgaaagaggatcttgtaatcgtagtgatgnnnnnnngtgtgaagttaagtgcacaaa |
382 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| ||| |||||||| |||| |||||||| || | ||||||| ||| | || |||||||||||| |
|
|
| T |
8958523 |
aaagaagggtagttaagatccaaagaaggttcagagcaatcattcgaagaagatcttgtgatggcagtgatgtttttttgtgagtagctaagtgcacaaa |
8958424 |
T |
|
| Q |
383 |
gaagattaacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattgggatcaacataaccagctcccaatgcaagaggagttgc |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
8958423 |
gaagattaacataatcttgtacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatgcaaaaggagttgc |
8958324 |
T |
|
| Q |
483 |
aacttcattatctttcccaatgtctttgatatgttccttggtattatca |
531 |
Q |
| |
|
||| |||||| || ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
8958323 |
tgctttattatcatttccaatgtctttaatatgttccttagtattatca |
8958275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 545
Target Start/End: Complemental strand, 8963802 - 8963275
Alignment:
| Q |
18 |
atgcttcccatcctgccatgtgatgtaaccaaaagctacttcattattttgtgtcattctagggccttcaatcctcaacttgtagcttagcatctcattc |
117 |
Q |
| |
|
||||||||||| || ||| |||| || ||||||| || |||||| || |||||||||| || ||||||||||||| ||||||||||| |||||||| |
|
|
| T |
8963802 |
atgcttcccattcttccaagtgagatatccaaaagataattcattcttctgtgtcattcgtcggtgttcaatcctcaacctgtagcttagcttctcattc |
8963703 |
T |
|
| Q |
118 |
ttcttattgaacatcaacttatttgggataacactaacacggtatccttcaacaggcgtaatgctagcaacataaatggcttgtccctcaccaacattgg |
217 |
Q |
| |
|
|||| |||||||| |||| ||||||| ||||||| ||| | | ||||||| || ||||||||||||||||||| | |||||| ||||||||||||| |
|
|
| T |
8963702 |
ttctcattgaacaccaacctatttggaataacaccgacattgaagccttcaattggagtaatgctagcaacataaaccgtttgtccttcaccaacattgg |
8963603 |
T |
|
| Q |
218 |
taactgttctgtgaaattcttggatggcccttgaagaagaatttccagcattgaaaaaagctataaaagaagggtaattaagatccaaggaaggtttaga |
317 |
Q |
| |
|
||||||| ||||||||||||||| | ||||| ||||||||||||||| ||||||||||| |||||||||||||| || |||| ||||||||| ||||| |
|
|
| T |
8963602 |
taactgtcctgtgaaattcttgggctgtccttggagaagaatttccagcgttgaaaaaagcaataaaagaagggtagttgagatgcaaggaaggattaga |
8963503 |
T |
|
| Q |
318 |
acaatcattgaaagaggatcttgtaatcgtagtgatgnnnnnnngtgtgaagttaagtgcacaaagaagattaacataatcttgtacaccaacatcataa |
417 |
Q |
| |
|
|||||||||| | || |||||||| || | ||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
8963502 |
acaatcattggatgatgatcttgttatggcagtaatgtgtttttgtgtgaagttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataa |
8963403 |
T |
|
| Q |
418 |
acaagaccagggtcaagtgctctattgggatcaacataaccagctcccaatgcaagaggagttgcaacttcattatctttcccaatgtctttgatatgtt |
517 |
Q |
| |
|
||||||||||||||||||||| |||| || | | || ||||||||||||||||| ||| ||||| || |||||||| ||||||||||||||| ||| |
|
|
| T |
8963402 |
acaagaccagggtcaagtgctttattagggttgatatgaccagctcccaatgcaaaaggtgttgctgctatgttatcttttccaatgtctttgataagtt |
8963303 |
T |
|
| Q |
518 |
ccttggtattatcatatatgtttgatgt |
545 |
Q |
| |
|
|||| || |||||| |||||| |||||| |
|
|
| T |
8963302 |
ccttagtgttatcaaatatgtctgatgt |
8963275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 545
Target Start/End: Complemental strand, 8975198 - 8974671
Alignment:
| Q |
18 |
atgcttcccatcctgccatgtgatgtaaccaaaagctacttcattattttgtgtcattctagggccttcaatcctcaacttgtagcttagcatctcattc |
117 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||| |||||||| ||||||| || ||| | |||||||||||||||||||||||| |||| || |
|
|
| T |
8975198 |
atgcttcccatcctgccaagtgagatatccaaaagaaacttcattcttttgtgccactcttgcatcttcaatcctcaacttgtagcttaatttctcgttt |
8975099 |
T |
|
| Q |
118 |
ttcttattgaacatcaacttatttgggataacactaacacggtatccttcaacaggcgtaatgctagcaacataaatggcttgtccctcaccaacattgg |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||| || | ||||| | | |||||| |||||||||||| | || ||| | ||||||||||| |
|
|
| T |
8975098 |
ttcttattgaacaccaacttatttgggataactctaacatggaacccttcgattcgagtaatgtgagcaacataaatcgattttccttgaccaacattgg |
8974999 |
T |
|
| Q |
218 |
taactgttctgtgaaattcttggatggcccttgaagaagaatttccagcattgaaaaaagctataaaagaagggtaattaagatccaaggaaggtttaga |
317 |
Q |
| |
|
||| |||||| |||||||||||| ||| |||||||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
8974998 |
taattgttctatgaaattcttgggtggtccttgaagaagaatttgcagcattgaagaaagcaataaaagaagggtaattgagatccaacgaaggtttaga |
8974899 |
T |
|
| Q |
318 |
acaatcattgaaagaggatcttgtaatcgtagtgatgnnnnnnngtgtgaagttaagtgcacaaagaagattaacataatcttgtacaccaacatcataa |
417 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8974898 |
acaatcattagtagaagatcttgtaatgatagtgatgtttttttgtgtgaagttgagtgcacaaagaagattgacataatcttgtacaccaacatcataa |
8974799 |
T |
|
| Q |
418 |
acaagaccagggtcaagtgctctattgggatcaacataaccagctcccaatgcaagaggagttgcaacttcattatctttcccaatgtctttgatatgtt |
517 |
Q |
| |
|
||||| ||||||| ||||||| | ||||| | | || ||||||||| ||||| ||| ||||| || | ||| |||| ||||||||||| || ||| |
|
|
| T |
8974798 |
acaagtccagggttaagtgctttgttggggttgatatgaccagctccttgtgcaaaaggtgttgctacgttgttaccttttccaatgtcttttatgagtt |
8974699 |
T |
|
| Q |
518 |
ccttggtattatcatatatgtttgatgt |
545 |
Q |
| |
|
|||| ||||||||| |||||| |||||| |
|
|
| T |
8974698 |
ccttagtattatcaaatatgtctgatgt |
8974671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 83 - 545
Target Start/End: Original strand, 9947818 - 9948280
Alignment:
| Q |
83 |
cttcaatcctcaacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggataacactaacacggtatccttcaacaggcgtaatgct |
182 |
Q |
| |
|
||||| |||||||||| | |||||| |||||||||||| || ||||| |||||| |||||||||||||| ||| | | |||| | ||| |||||| | |
|
|
| T |
9947818 |
cttcattcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttgggataacactgacatgaaaccctttgataggagtaatgtt |
9947917 |
T |
|
| Q |
183 |
agcaacataaatggcttgtccctcaccaacattggtaactgttctgtgaaattcttggatggcccttgaagaagaatttccagcattgaaaaaagctata |
282 |
Q |
| |
|
|||||||||| | || | |||||||||||||||| |||||| |||| || ||||| || ||| |||||||||||||| ||||||| ||||| ||| |
|
|
| T |
9947918 |
ggcaacataaactgtttatgcctcaccaacattggtcactgttttgtggaactcttgtattctcctccaagaagaatttccaccattgaagaaagcaata |
9948017 |
T |
|
| Q |
283 |
aaagaagggtaattaagatccaaggaaggtttagaacaatcattgaaagaggatcttgtaatcgtagtgatgnnnnnnngtgtgaagttaagtgcacaaa |
382 |
Q |
| |
|
||| |||||| |||| |||||| ||||||||||| ||||||||||| | |||||||||||| |||||||| |||||||||||||| || | | |
|
|
| T |
9948018 |
aaaaaagggtggttaatatccaatgaaggtttagagcaatcattgaatgtggatcttgtaatggtagtgatatgtttctgtgtgaagttaagtccataga |
9948117 |
T |
|
| Q |
383 |
gaagattaacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattgggatcaacataaccagctcccaatgcaagaggagttgc |
482 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||| |||||| |||||||| |||||| | | ||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
9948118 |
gaagattaacataatcttgtgcaccaacgtcataaagaagaccggggtcaagcgctctagtagtatcaacataactagctcctaatgcaagaggagttgc |
9948217 |
T |
|
| Q |
483 |
aacttcattatctttcccaatgtctttgatatgttccttggtattatcatatatgtttgatgt |
545 |
Q |
| |
|
||||| ||| ||| || |||||||||||||||||||| | ||||||| ||||| ||||||| |
|
|
| T |
9948218 |
aactttgttaccttctccgatgtctttgatatgttccttagcattatcaaatatggttgatgt |
9948280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 513
Target Start/End: Original strand, 9949362 - 9949509
Alignment:
| Q |
362 |
gtgtgaagttaagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattgggatcaacataaccagc |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| | |||| || |||||| ||||||||| ||| | |
|
|
| T |
9949362 |
gtgtgaagttaagtgcacaaagaagattaagataatgtcttacaccaacatcataaacaagactaaggtc-agagctctacaaggatcaacacaac---c |
9949457 |
T |
|
| Q |
462 |
tcccaatgcaagaggagttgcaacttcattatctttcccaatgtctttgata |
513 |
Q |
| |
|
|||||||||||| || ||| |||||| ||| || | ||||||| ||||||| |
|
|
| T |
9949458 |
tcccaatgcaagtggggttccaactttgttacctcttccaatgtatttgata |
9949509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 83 - 545
Target Start/End: Original strand, 34962130 - 34962589
Alignment:
| Q |
83 |
cttcaatcctcaacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggataacactaacacggtatccttcaacaggcgtaatgct |
182 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||| ||| |||| ||| || |||||||||||| | ||||| | |||| || || | |||||| |
|
|
| T |
34962130 |
cttcaatcctcaatttgtagcttagcttctcattcttctcattaaacaccaaattgtttgggataacagtgacacgaaaccctttaattggagcaatgct |
34962229 |
T |
|
| Q |
183 |
agcaacataaatggcttgtccctcaccaacattggtaactgttctgtgaaattcttggatggcccttgaagaagaatttccagcattgaaaaaagctata |
282 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| || | ||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
34962230 |
agcaacataaattgcttgtccgtcaccaacattggtaactgttctacgaaattcttgtatcggccttgaagaagaatttccatcattgaaaaaagcaata |
34962329 |
T |
|
| Q |
283 |
aaagaagggtaattaagatccaaggaaggtttagaacaatcattgaaagaggatcttgtaatcgtagtgatgnnnnnnngtgtgaagttaagtgcacaaa |
382 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||| | | ||||||||||||| |
|
|
| T |
34962330 |
aaagaagggtagttaagatccaaggaaggtttagaacaatcattggaagaggatcttgtgatggtagtgatgtttttttgtgagtatttaagtgcacaaa |
34962429 |
T |
|
| Q |
383 |
gaagattaacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattgggatcaacataaccagctcccaatgcaagaggagttgc |
482 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||| |||| |
|
|
| T |
34962430 |
gaagattcacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattaggattaacatgaccagctcccaatgcaaaaggtgttg- |
34962528 |
T |
|
| Q |
483 |
aacttcattatctttcccaatgtctttgatatgttccttggtattatcatatatgtttgatgt |
545 |
Q |
| |
|
|| | || ||| | |||||||||||||| |||||||| | ||||||| |||||| |||||| |
|
|
| T |
34962529 |
--ctgctttgtctgttccaatgtctttgatttgttccttagaattatcaaatatgtctgatgt |
34962589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 25927945 - 25928062
Alignment:
| Q |
110 |
tctcattcttcttattgaacatcaacttatttgggataacactaacacggtatccttcaacaggcgtaatgctagcaacataaatggcttgtccctcacc |
209 |
Q |
| |
|
|||||||||||| ||| |||| ||||| |||||||||||||||||||| | |||| || || ||||||||||||| ||||| |||||||| || |
|
|
| T |
25927945 |
tctcattcttctcattaaacactaacttgtttgggataacactaacacgaaaacctttaatagcaataatgctagcaacgtaaatcatatgtccctctcc |
25928044 |
T |
|
| Q |
210 |
aacattggtaactgttct |
227 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
25928045 |
aacattggtaattgttct |
25928062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 34961753 - 34961714
Alignment:
| Q |
186 |
aacataaatggcttgtccctcaccaacattggtaactgtt |
225 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
34961753 |
aacataaattgcttgtccctccccaacattggtaactgtt |
34961714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 545
Target Start/End: Original strand, 21686452 - 21686972
Alignment:
| Q |
22 |
ttcccatcctgccatgtgatgtaaccaaaagctacttcattattttgtgtcattctagggccttcaatcctcaacttgtagcttagcatctcattcttct |
121 |
Q |
| |
|
||||||||| |||| | || |||||| || ||||||| ||| |||||||||||||| |||||||| ||| ||||||||||||||| | |||| ||||||| |
|
|
| T |
21686452 |
ttcccatcccgccaagagaggtaaccgaaggctactttattcttttgtgtcattcttgggccttcgatcttcaacttgtagcttatcttctcgttcttct |
21686551 |
T |
|
| Q |
122 |
tattgaacatcaacttatttgggataacactaacacggtatccttcaacaggcgtaatgctagcaacataaatggcttgtccctcaccaacattggtaac |
221 |
Q |
| |
|
| ||||||| |||||||||||| |||||| | |||||| | |||| || || ||||||||||||| ||| | | | | |||||||||||| ||||| |
|
|
| T |
21686552 |
tcttgaacaccaacttatttggaataacagtgacacggaaccctttaatgggagtaatgctagcaaaatatgttgtctttttctcaccaacatttgtaac |
21686651 |
T |
|
| Q |
222 |
tgttctgtgaaattcttggatggcccttgaagaagaatttccagcattgaaaaaagctataaaagaagggtaattaagatccaaggaaggtttagaacaa |
321 |
Q |
| |
|
||||||||||||||| | | | |||||||||| || | ||||||| | ||||| |||||||||||||| |||||||| |||||||||||||| ||| |
|
|
| T |
21686652 |
tgttctgtgaaattcatttgttgtccttgaagaa---ttacgagcattggagaaagcaataaaagaagggtagttaagatctaaggaaggtttagagcaa |
21686748 |
T |
|
| Q |
322 |
tcattgaaagaggatcttgtaatcgtagtgatgnnnnnnngtgtgaagttaagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaa |
421 |
Q |
| |
|
||||||||||| ||||||||||| | | ||||| |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
21686749 |
tcattgaaagaagatcttgtaatggcactgatgtttttttgtgtgaagttaagtgcacaaagaagattaatataatcttgtacaccgatatcataaacaa |
21686848 |
T |
|
| Q |
422 |
gaccagggtcaagtgctctattgggatcaacataaccagctcccaatgcaagaggagttgcaacttcattatctttcccaatgtctttgatatgttcctt |
521 |
Q |
| |
|
||||||| |||||||||||||| || | || || ||||||||||||||||| ||||||||| || ||| | || ||||||||||||||||||||||| |
|
|
| T |
21686849 |
gaccaggatcaagtgctctattagggttaatatgaccagctcccaatgcaaaaggagttgctgctctgttaccatttccaatgtctttgatatgttcctt |
21686948 |
T |
|
| Q |
522 |
ggtattatcatatatgtttgatgt |
545 |
Q |
| |
|
||||| || |||||| |||||| |
|
|
| T |
21686949 |
agtattgtctaatatgtctgatgt |
21686972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 127 - 448
Target Start/End: Complemental strand, 49008841 - 49008517
Alignment:
| Q |
127 |
aacatcaacttatttgggataacactaacacggtatccttcaacaggcgtaatgctagcaacataaatggcttgtccctcaccaacattggtaactgttc |
226 |
Q |
| |
|
|||| |||||| |||||||||||||||||| || | ||||||| ||| |||||| | || || || |||| | || |||| ||||||||||| ||||||| |
|
|
| T |
49008841 |
aacaccaacttgtttgggataacactaacatggaacccttcaataggtgtaatgttggctacgtagatggttggttcctctccaacattggttactgttc |
49008742 |
T |
|
| Q |
227 |
tgtgaaattcttgg---atggcccttgaagaagaatttccagcattgaaaaaagctataaaagaagggtaattaagatccaaggaaggtttagaacaatc |
323 |
Q |
| |
|
| ||||||||||| || || |||| | | | || ||||||||| | |||||||||||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
49008741 |
tttgaaattcttgtgtaatcacctttgatttaacactagcattattgaaaaaggaaataaaagaagggtaattaaggtccaaagaagggttagaacaatt |
49008642 |
T |
|
| Q |
324 |
attgaaagaggatcttgtaatcgtagtgatgnnnnnnngtgtgaagttaagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaaga |
423 |
Q |
| |
|
|| ||||| ||||| || || | | ||| | |||||||| | |||||| |||||||| |||||||||||| || ||||||||||||| |
|
|
| T |
49008641 |
gttaaaagacgatctcgtgatggctgcgatattcttctgagtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagt |
49008542 |
T |
|
| Q |
424 |
ccagggtcaagtgctctattgggat |
448 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
49008541 |
ccaggatcaagtgctctattgggat |
49008517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 30100372 - 30100333
Alignment:
| Q |
272 |
aaaaagctataaaagaagggtaattaagatccaaggaagg |
311 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
30100372 |
aaaaagctataaatgaagggtaattaagatccaaagaagg |
30100333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 30090546 - 30090583
Alignment:
| Q |
274 |
aaagctataaaagaagggtaattaagatccaaggaagg |
311 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
30090546 |
aaagctataaatgaagggtaattaagatccaaagaagg |
30090583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 30087294 - 30087330
Alignment:
| Q |
274 |
aaagctataaaagaagggtaattaagatccaaggaag |
310 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
30087294 |
aaagctataaatgaagggtaattaagatccaaagaag |
30087330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University