View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12560_low_4 (Length: 517)
Name: NF12560_low_4
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12560_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 23 - 509
Target Start/End: Complemental strand, 32552148 - 32551655
Alignment:
| Q |
23 |
acacatccgtgttcatggtcatggttttgagcatgtattgtttgaatttgatagccaacttaatcttgtaaatgccattctcaaagcttcaacttttgag |
122 |
Q |
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| T |
32552148 |
acacatccgtgttcatggtcatggttttgagcatgtattgtttgaatttgatagccaagttaatcttgtaaatgccattctcaaagcttcaacttttgag |
32552049 |
T |
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| Q |
123 |
aatggttaacaagtgaatataattgctcactatataacatgaat-----gtcaatatctgaatctagccccgtgaattattaatctattatcaccttatt |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32552048 |
aatagttaacaagtgaatataattgctcactatataacatgaattgaatgtcaatatctgaatctagccccgttaattattaatctattatcaccttatt |
32551949 |
T |
|
| Q |
218 |
tgtattttgcttttcatattttgcaatgaaaccaaataaaatcatttggactctacnnnnnnnnn--gggtaaactagtaagaactataactaactgtgt |
315 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32551948 |
tgtattttgtttttcatattttgcgatgaaaccaaataaaatcatttggactctacaaaaaaaaaaagggtaaactagtaagaactataactaactgtgt |
32551849 |
T |
|
| Q |
316 |
caccgcagttaggtgttgctgtagatagcctttcctagtctttcatgtaactaactttctattgataacaaatctcaacaaatttcagagatgaatacac |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32551848 |
caccgcagttaggtgttgctgtagatagcctttcctagtctttcatgtaactaactttctattgataacaaatctcaacaaatttcagagatgaatacac |
32551749 |
T |
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| Q |
416 |
aatctctcaagtttctatagctttatcgcttttctgttatggtatatagagctttctagttccatttctacggcttccgagtctgattcttctc |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32551748 |
aatctctcaagtttctatagctttatcgcttttctgttatggtatatagagctttctagttccatttctacggcttccgagtctgattcttctc |
32551655 |
T |
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