View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12560_low_5 (Length: 472)
Name: NF12560_low_5
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12560_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 41130990 - 41130745
Alignment:
| Q |
1 |
acgctttatcctccttctcctatttctccttctcctcttctttgtatttgctaacctagtttacctcctctttgatatcgtctccaaatcataattacta |
100 |
Q |
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| T |
41130990 |
acgctttatcctccttctcctatttctccttctcctcttctttctatgtgctaacctagtttacctcctctttgatatcgtctccaaatcataattacta |
41130891 |
T |
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| Q |
101 |
ttatagtctcttccttcaaaacggtacgttccatctttcttatttggttttaataattatattgatcgatctgtccttttatctttaaccttcatgtttc |
200 |
Q |
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| T |
41130890 |
ttatagtctcttccttcaaaacggtacgttccatctttcttatttaatttttataattatattgatcgatttgtccttttatctttaaccttcatgtttc |
41130791 |
T |
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| Q |
201 |
taagaaaaggatattggtgatccaaattttagtcggaaggtaaatt |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41130790 |
taagaaaaggatattggtgatccaaattttagtcggaaggtaaatt |
41130745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 314 - 461
Target Start/End: Complemental strand, 41130682 - 41130535
Alignment:
| Q |
314 |
gttctcctgaataatttatcgttgttattgatttattccgannnnnnnnaaatttcacttatattattagtttccttttcaattttatgggtttggcatg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41130682 |
gttctcctgaataatttatcgttgttattgatttattccgaaattttttaaatttcacttatattattagtttccttttcaattttatgggtttggcatg |
41130583 |
T |
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| Q |
414 |
tgcaacagatggggtcgcaccttggccaaattttgtgttttatgatga |
461 |
Q |
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| T |
41130582 |
tgcaacagatggggtcgcaccttggccaaattttgtgttttattatga |
41130535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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