View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12560_low_7 (Length: 410)
Name: NF12560_low_7
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12560_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 218 - 394
Target Start/End: Original strand, 45206282 - 45206462
Alignment:
| Q |
218 |
ttagtactaatgtgttgacttgaatgattgtaattaagaaagcacaattggaagttggaacatagaaataacaaacata----atgagacagaacaagta |
313 |
Q |
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| T |
45206282 |
ttagtactaatgtgttgacttgaatgattgtaattaagaaagcacaattggaagttggaacatagaaataacaaacatatataatgagacagaacaagta |
45206381 |
T |
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| Q |
314 |
actaacaacttcaataaaacagtaaaaataaatctgataattatatgactaaattaatctcattttcttacatcaagatgt |
394 |
Q |
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| T |
45206382 |
actaacaacttcaataaaacagtaaaaataaatctgataattatatgactaaattaatctcattttcttacatcaagatgt |
45206462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 45206136 - 45206259
Alignment:
| Q |
68 |
ttccggagaataaaacagtaacatgtaccacatacctatgtgattggtggcaaactgcagttcaatgttgtctttggacaacttgaaagggcatgccata |
167 |
Q |
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| T |
45206136 |
ttccggagaataaaacagtaacatgcaccacatacctatgtgattggtggcaaactgcagttcaatgttgtctttggacaacttgaaagggcatgccata |
45206235 |
T |
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| Q |
168 |
actcctgcattatttcttacagtt |
191 |
Q |
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| T |
45206236 |
actcctgcattatttcttacagtt |
45206259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 45247831 - 45247921
Alignment:
| Q |
95 |
ccacatacctatgtgattggtggcaaactgcagttcaatgttgtctttggacaacttgaaagggcatgccataactcctgcattatttctt |
185 |
Q |
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| T |
45247831 |
ccacatacctaagtggtttgtggcaaactgtagttcaatgttgtctttggacagcatgaaagggcatgacatgattcctgcattgtttctt |
45247921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 45231635 - 45231725
Alignment:
| Q |
95 |
ccacatacctatgtgattggtggcaaactgcagttcaatgttgtctttggacaacttgaaagggcatgccataactcctgcattatttctt |
185 |
Q |
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| T |
45231635 |
ccacatacctaggtggtttgtagcaaaatgcagttcaatgttgtctttggacagcatgaaagggcataacatgattcctgcattgtttctt |
45231725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 45212843 - 45212929
Alignment:
| Q |
99 |
atacctatgtgattggtggcaaactgcagttcaatgttgtctttggacaacttgaaagggcatgccataactcctgcattatttctt |
185 |
Q |
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| T |
45212843 |
atacctaagtggtttgttgcaaactgtagttcgatgttgtcattggaaagcatgaaagggcatgccatgactcctgcattgtttctt |
45212929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 45233529 - 45233565
Alignment:
| Q |
326 |
aataaaacagtaaaaataaatctgataattatatgac |
362 |
Q |
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| T |
45233529 |
aataaaacagtaaaaataaatctgataattatatgac |
45233565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 45233481 - 45233517
Alignment:
| Q |
287 |
aacaaacataatgagacagaacaagtaactaacaact |
323 |
Q |
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| T |
45233481 |
aacacacataatgagacagaacaagtgactaacaact |
45233517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 19277712 - 19277760
Alignment:
| Q |
97 |
acatacctatgtgattggtggcaaactgcagttcaatgttgtctttgga |
145 |
Q |
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| T |
19277712 |
acatacctaaatgatttgtggcaaattgtagttcaatgttgtctttgga |
19277760 |
T |
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