View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12560_low_8 (Length: 372)

Name: NF12560_low_8
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12560_low_8
NF12560_low_8
[»] chr1 (6 HSPs)
chr1 (3-354)||(32828951-32829303)
chr1 (4-362)||(15853336-15853685)
chr1 (3-271)||(5964920-5965188)
chr1 (31-77)||(18414544-18414590)
chr1 (31-77)||(32519777-32519823)
chr1 (31-71)||(8110701-8110741)
[»] chr4 (5 HSPs)
chr4 (3-362)||(34851549-34851900)
chr4 (7-240)||(1206382-1206612)
chr4 (7-74)||(29688941-29689009)
chr4 (8-73)||(33287474-33287540)
chr4 (31-77)||(34806296-34806342)
[»] chr6 (5 HSPs)
chr6 (3-362)||(720002-720352)
chr6 (3-75)||(11121398-11121471)
chr6 (11-140)||(24316543-24316667)
chr6 (28-75)||(1122227-1122274)
chr6 (31-77)||(18898923-18898969)
[»] chr3 (2 HSPs)
chr3 (3-356)||(46028037-46028382)
chr3 (11-79)||(587311-587378)
[»] chr5 (4 HSPs)
chr5 (52-357)||(17812191-17812491)
chr5 (8-317)||(17109991-17110293)
chr5 (28-61)||(641022-641055)
chr5 (30-75)||(16044471-16044516)
[»] scaffold0024 (1 HSPs)
scaffold0024 (41-354)||(62284-62605)
[»] chr8 (7 HSPs)
chr8 (9-163)||(17648806-17648960)
chr8 (7-73)||(18464741-18464808)
chr8 (88-142)||(18464657-18464711)
chr8 (3-126)||(3730389-3730511)
chr8 (31-77)||(12498739-12498785)
chr8 (31-77)||(18381383-18381429)
chr8 (28-61)||(22935508-22935541)
[»] chr2 (3 HSPs)
chr2 (3-83)||(9893864-9893943)
chr2 (32-75)||(17419108-17419151)
chr2 (30-61)||(30960874-30960905)
[»] chr7 (2 HSPs)
chr7 (3-75)||(21292300-21292373)
chr7 (28-77)||(37573537-37573586)
[»] scaffold0256 (1 HSPs)
scaffold0256 (31-77)||(4064-4110)
[»] scaffold0009 (1 HSPs)
scaffold0009 (31-77)||(194680-194726)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 3 - 354
Target Start/End: Complemental strand, 32829303 - 32828951
Alignment:
Q  3 cacagacaaatgcttgaaaatgggggtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaactgatcaactgactaattagccatttct 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32829303 cacagacaaatgcttgaaaatgggggtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaactgatcaactgattaattagccatttct 32829204  T
Q  103 ggcccacatcaagcgaacatacaaacacagccgaggcacattaaggatggcatatgaactcgaccgccaacacggtgacgaatatcgcacatccacaatt 202  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32829203 ggcccacatcaagcgaacatacaaacacaaccgaggcacattaaggatgacatatgaactcgaccgccaacacggtgacaaatatcgcacatccacaatt 32829104  T
Q  203 tactgtgacaaaccacacaaattcacggccatatctagtcccacaatccaaaatcgatcacgtgaccgaatca-aattttttaaaaatggcaacaatcca 301  Q
    |||||||||||| |||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||| | ||||||||||| |||||||| |||    
T  32829103 tactgtgacaaagcacacaaattcacgaccatttctagccccacaatccaaaatcgatcacgagaccgaatcagatttttttaaaaacggcaacaaccca 32829004  T
Q  302 aagtagtccaatcctttgacgcggtagatgcaaaactgaatcgtgaaaacctg 354  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32829003 aagcagtccaatcctttgacgcagtagatgcaaaactgaatcgtgaaaacctg 32828951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 4 - 362
Target Start/End: Original strand, 15853336 - 15853685
Alignment:
Q  4 acagacaaatgcttgaaaatgggggtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaactgatcaactgactaattagccatttctg 103  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||| |||||||||    
T  15853336 acagacaaatgcttgaaaataggggtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaactgat--------taatta-ccatttctg 15853426  T
Q  104 gcccacatcaagcgaacatacaaacacagccgaggcacattaaggatggcatatgaactcgaccgccaacacggtgacgaatatcgcacatccacaattt 203  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  15853427 gcccatatcaagcgaacatacaaacacagccgaggcacattgaggatggcatatgaacttgaccgccaatacggtgacgaatattgcacatccacaattt 15853526  T
Q  204 actgtgacaaaccacacaaattcacggccatatctagtcccacaatccaaaatcgatcacgtgaccgaatcaaattttttaaaaatggcaacaatccaaa 303  Q
    |||||||||||||||||||||| | |||||| ||||| |||| |||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||    
T  15853527 actgtgacaaaccacacaaattaatggccatttctagccccataatccaaaatcgatcacgagaccgaatcaaatttttaaaaaacggcaacaacccaaa 15853626  T
Q  304 gtagtccaatcctttgacgcggtagatgcaaaactgaatcgtgaaaacctgcagtgaac 362  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||    
T  15853627 gcagtccaatcctttgacgtggtagatgcaaaactgaatcgtgaaaaccagcagagaac 15853685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 3 - 271
Target Start/End: Complemental strand, 5965188 - 5964920
Alignment:
Q  3 cacagacaaatgcttgaaaatgggggtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaactgatcaactgactaattagccatttct 102  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||    
T  5965188 cacagacaaatgcttgaaaatgggggtgaattcgaccgccaacacggtaattaacgaattcacgcgcaccaactcatcaagtgattaattagccatttct 5965089  T
Q  103 ggcccacatcaagcgaacatacaaacacagccgaggcacattaaggatggcatatgaactcgaccgccaacacggtgacgaatatcgcacatccacaatt 202  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||   |||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  5965088 ggcccacatcaagcgaacatacaaacccagccgaggcacattgaggacatcatatgaactcgactgccaacacggtaacgaatatcgcacacccacaatt 5964989  T
Q  203 tactgtgacaaaccacacaaattcacggccatatctagtcccacaatccaaaatcgatcacgtgaccga 271  Q
    ||| ||||||||| || |||||||||  |||| | ||| | ||| ||||||||||||||||| ||||||    
T  5964988 tacagtgacaaacgacgcaaattcacaaccatttttagccacacgatccaaaatcgatcacgagaccga 5964920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 18414544 - 18414590
Alignment:
Q  31 gattcgaccgccaacacggtaattaacgaattcacgcgcaccaactg 77  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||||    
T  18414544 gattcaaccgccaacacggtaattaacaaattcacacgcactaactg 18414590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 32519823 - 32519777
Alignment:
Q  31 gattcgaccgccaacacggtaattaacgaattcacgcgcaccaactg 77  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||||    
T  32519823 gattcaaccgccaacacggtaattaacaaattcacacgcactaactg 32519777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 8110701 - 8110741
Alignment:
Q  31 gattcgaccgccaacacggtaattaacgaattcacgcgcac 71  Q
    ||||| ||||||||||||||||||||| ||||||| |||||    
T  8110701 gattcaaccgccaacacggtaattaacaaattcacacgcac 8110741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 362
Target Start/End: Original strand, 34851549 - 34851900
Alignment:
Q  3 cacagacaaatgcttgaaaatgggggtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaactgatcaactgactaattagccatttct 102  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  34851549 cacatacaaatgcttgaaaatgggggtgaattcgactgccaacacggtaattaacgaattcacgcgcaccaactgat--------taattagccatttct 34851640  T
Q  103 ggcccacatcaagcgaacatacaaacacagccgaggcacattaaggatggcatatgaactcgaccgccaacacggtgacgaatatcgcacatccacaatt 202  Q
    ||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34851641 ggcccacatcaagcgaacatacaaacacaaccgaggcaccttgaggatggcatatgaaatcgaccgccaacacggtgacgaatatcgcacatccacaatt 34851740  T
Q  203 tactgtgacaaaccacacaaattcacggccatatctagtcccacaatccaaaatcgatcacgtgaccgaatcaaattttttaaaaatggcaacaatccaa 302  Q
    |||| |||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||    
T  34851741 tactttgacaaaccacacaaattcacgaccatttctagccccacaatccaaaatcgatcacgagaccgaatcagatttttaaaaaatggcaacaacccaa 34851840  T
Q  303 agtagtccaatcctttgacgcggtagatgcaaaactgaatcgtgaaaacctgcagtgaac 362  Q
    || ||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||    
T  34851841 agcagtccaatcctttaacgcagtagatgcaaaattgaatcgtgaaaacctgcagagaac 34851900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 1206612 - 1206382
Alignment:
Q  7 gacaaatgcttgaaaatgggggtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaactgatcaactgactaattagccatttctggcc 106  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||  ||||||||| ||||||||||||| |||||    
T  1206612 gacaaatgtttgaaaatgggggtgaattcgaccgccaacacggtaattaacgaattcacgtgcaccaac--atcaactgattaattagccatttatggcc 1206515  T
Q  107 cacatcaagcgaacatacaaacacagccgaggcacattaaggatggcatatgaactcgaccgccaacacggtgacgaatatcgcacatccacaatttact 206  Q
    ||||| |||||||||||||||| ||||||||||||||| |||||| |||||||||||||| ||||||| ||| |||||||||||||| |||||||||||     
T  1206514 cacattaagcgaacatacaaacccagccgaggcacattgaggatgacatatgaactcgacggccaacatggtaacgaatatcgcacacccacaatttacg 1206415  T
Q  207 gtgacaaaccacacaaattcacggccatatctag 240  Q
    ||||| ||  || ||||||||||||||| |||||    
T  1206414 gtgac-aatgacgcaaattcacggccatttctag 1206382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 29688941 - 29689009
Alignment:
Q  7 gacaaatgcttgaaaatgggg-gtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaa 74  Q
    ||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||    
T  29688941 gacaaatgcttgaaagtggggagtgggttcgaccgccaacacggtaattagcgaatccacgcgcaccaa 29689009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 33287540 - 33287474
Alignment:
Q  8 acaaatgcttgaaaatggggg-tggattcgaccgccaacacggtaattaacgaattcacgcgcacca 73  Q
    |||||||||||||| |||||  |||||| ||||||||||||||||| |||| ||| |||| ||||||    
T  33287540 acaaatgcttgaaattggggactggatttgaccgccaacacggtaaataacaaatccacgtgcacca 33287474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 34806296 - 34806342
Alignment:
Q  31 gattcgaccgccaacacggtaattaacgaattcacgcgcaccaactg 77  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||||    
T  34806296 gattcaaccgccaacacggtaattaacaaattcacacgcactaactg 34806342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 362
Target Start/End: Complemental strand, 720352 - 720002
Alignment:
Q  3 cacagacaaatgcttgaaaatgggggtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaactgatcaactgactaattagccatttct 102  Q
    |||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  720352 cacaaacaaatgcttgaaaataggggtggatttgaccgccaacacggtaattaacgaattcacgcgcaccaactgat--------taattagccatttct 720261  T
Q  103 ggcccacatcaagcgaacatacaaacacagccgaggcacattaaggatggcatatgaactcgaccgccaacacggtgacgaatatcgcacatccacaatt 202  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  720260 ggcccacatcaagtgaacatacaaacacagccgaggcacattgaggatgacatatgaactcgaccgccaacacagtgacgaatatcacacatccacaatt 720161  T
Q  203 tactgtgacaaaccacacaaattcacggccatatctagtcccacaatccaaaatcgatcacgtgaccgaatcaaattttttaaaaatggcaacaatccaa 302  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||| |||||| ||||| |||||||| ||||    
T  720160 tactgtgacaaaccacacaaattcacggccatttctagccccacaatccaaaatcgatcacgagaccgaatcagatttttaaaaaacggcaacaacccaa 720061  T
Q  303 agtagtccaatcctttgacgcggtagatgcaaaactgaatcgtgaaaacctgcagtgaac 362  Q
    |||||| | ||||||||||||||| ||||||||||||||| |||||||||||||| ||||    
T  720060 agtagttc-atcctttgacgcggtcgatgcaaaactgaattgtgaaaacctgcagagaac 720002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 11121471 - 11121398
Alignment:
Q  3 cacagacaaatgcttgaaaatgggg-gtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaac 75  Q
    |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| |||||||||    
T  11121471 cacagacagatgcttgaaagtggggagtggattcgaccgccaacacggtaattaacgaatccacacgcaccaac 11121398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 24316667 - 24316543
Alignment:
Q  11 aatgcttgaaaatgggggtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaactgatcaactgactaattagccatttctggcccaca 110  Q
    ||||||||||||||||| || ||||||||| |||||||||||||| ||||| |||| ||||||||||||||     | ||| |||||||||| ||| |||    
T  24316667 aatgcttgaaaatgggg-tgaattcgaccgtcaacacggtaattagcgaatccacgtgcaccaactgatca----gcaaatcagccatttctagcctaca 24316573  T
Q  111 tcaagcgaacatacaaacacagccgaggca 140  Q
     |||| || ||||||| |||| ||||||||    
T  24316572 acaagagatcatacaagcacaaccgaggca 24316543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 1122274 - 1122227
Alignment:
Q  28 gtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaac 75  Q
    |||||||||||||||||||||||||||| ||||| ||| |||| ||||    
T  1122274 gtggattcgaccgccaacacggtaattagcgaatccacacgcaacaac 1122227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 18898969 - 18898923
Alignment:
Q  31 gattcgaccgccaacacggtaattaacgaattcacgcgcaccaactg 77  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||||    
T  18898969 gattcaaccgccaacacggtaattaacaaattcacacgcactaactg 18898923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 3 - 356
Target Start/End: Complemental strand, 46028382 - 46028037
Alignment:
Q  3 cacagacaaatgcttgaaaatgggggtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaactgatcaactgactaattagccatttct 102  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||  ||||||||||||        |||||||||||||||    
T  46028382 cacagacaaatgcttgaaaataggggtggattcgaccgccaacactgtaattaacgaattcacaagcaccaactgat--------taattagccatttct 46028291  T
Q  103 ggcccacatcaagcgaacatacaaacacagccgaggcacattaaggatggcatatgaactcgaccgccaacacggtgacgaatatcgcacatccacaatt 202  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46028290 ggcccacatcaagcgaacatacaaacacagccgaggcacgttgaggatggcatatggactcgaccgccaacacggtgacgaatatcgcacatccacaatt 46028191  T
Q  203 tactgtgacaaaccacacaaattcacggccatatctagtcccacaatccaaaatcgatcacgtgaccgaatcaaattttttaaaaatggcaacaatccaa 302  Q
    ||||||||||||||||||||||||||| |||| ||||| ||| |||| |||||||||||||| |||||||||| |||||| ||||| |||||||| ||||    
T  46028190 tactgtgacaaaccacacaaattcacgcccatttctagccccgcaattcaaaatcgatcacgagaccgaatcagatttttaaaaaaaggcaacaacccaa 46028091  T
Q  303 agtagtccaatcctttgacgcggtagatgcaaaactgaatcgtgaaaacctgca 356  Q
    || |||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  46028090 agcagtccaatcctttgacactgtatatgcaaaactgaatcgtgaaaacctgca 46028037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 587311 - 587378
Alignment:
Q  11 aatgcttgaaaatgggggtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaactgat 79  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||  |||| |||| ||||||||||||    
T  587311 aatgcttgaaaatgggg-tgaattcgacggccaacacggtaattagtgaatccacgtgcaccaactgat 587378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 52 - 357
Target Start/End: Complemental strand, 17812491 - 17812191
Alignment:
Q  52 attaacgaattcacgcgcaccaactgatcaactgactaattagccatttctggcccacatcaagcgaacatacaaacacagccgaggcacattaaggatg 151  Q
    ||||||||||||||||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17812491 attaacgaattcacgcgcaccaactgat--------taattagccatttatggcccacatcaagcgaacatacaaacacagccgaggcacattgaggatg 17812400  T
Q  152 gcatatgaactcgaccgccaacacggtgacgaatatcgcacatccacaatttactgtgacaaaccacac--aaattcacggccatatctagtcccacaat 249  Q
    |||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||| ||||||||    
T  17812399 gcatatgaactcgaccactaacacggtgacgaatatcgcacatccataatttactgtgacaaaccacacaaaaattcacggccatttctagccccacaat 17812300  T
Q  250 ccaaaatcgatcacgtgaccgaatcaaattttt-taaaaatggcaacaatccaaagtagtccaatcctttgacgcggtagatgcaaaactgaatcgtgaa 348  Q
    | ||||||||||||| |||||||||| ||||||  ||||| |||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  17812299 caaaaatcgatcacgagaccgaatcagatttttaaaaaaacggcaacaacccaaagcagtccaatcctttgacgtggtagatgcaaaactgaatcgtgaa 17812200  T
Q  349 aacctgcag 357  Q
    |||||||||    
T  17812199 aacctgcag 17812191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 8 - 317
Target Start/End: Complemental strand, 17110293 - 17109991
Alignment:
Q  8 acaaatgcttgaaaatgggggtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaactgatcaactgactaattagccatttctggccc 107  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| ||||||||||| |||       |||||||||||||||| |||    
T  17110293 acaaatgcttgaaaatgggggtgaattcgaccgccaacacggtaatcaatgaattcaggcgcaccaactcatct------taattagccatttctgaccc 17110200  T
Q  108 acatcaagcgaacatacaaacacagccgaggcacattaaggatggcatatgaactcgaccgccaacacggtgacgaatatcgcacatccacaatttactg 207  Q
    ||||||||||||||| ||||| |||||||||||| |||||||||||||||||| |||||||||| |||||| ||||||||| ||||||||||||||||||    
T  17110199 acatcaagcgaacattcaaacccagccgaggcacgttaaggatggcatatgaattcgaccgccaccacggtaacgaatatcacacatccacaatttactg 17110100  T
Q  208 tgacaaaccacacaaattcacggccatatctagtcccacaatccaaaatcgatcacgtgaccgaatcaaattttttaaaaatggcaacaatccaaagtag 307  Q
    |||||||| || ||||||||||||||| ||||| | ||||||||||||| ||||| | |||||| | | ||||||| ||||| ||||||| |||||| ||    
T  17110099 tgacaaacgacgcaaattcacggccatttctagccacacaatccaaaattgatcatgagaccgagtaagattttttgaaaatagcaacaa-ccaaagcag 17110001  T
Q  308 tccaatcctt 317  Q
     |||||||||    
T  17110000 gccaatcctt 17109991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 641055 - 641022
Alignment:
Q  28 gtggattcgaccgccaacacggtaattaacgaat 61  Q
    |||||||||||||||||||||||| |||||||||    
T  641055 gtggattcgaccgccaacacggtagttaacgaat 641022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 16044516 - 16044471
Alignment:
Q  30 ggattcgaccgccaacacggtaattaacgaattcacgcgcaccaac 75  Q
    ||||||||||||||||| |||||||| ||||| ||| |||||||||    
T  16044516 ggattcgaccgccaacatggtaattagcgaatccacccgcaccaac 16044471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 41 - 354
Target Start/End: Complemental strand, 62605 - 62284
Alignment:
Q  41 ccaacacggtaattaacgaattcacgcgcaccaactgatcaactgactaattagccatttctggcccacatcaagcgaacatacaaacacagccgaggca 140  Q
    ||||||||||||||| |||| |||||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  62605 ccaacacggtaattagcgaaatcacgcgcacgaactgatcaactgattaattagtcatttctagcccacatcaagcgaacatacaaacacagccgaggca 62506  T
Q  141 cattaaggatggcatatgaactcga---ccgccaacacggtgacgaatatcgcacatccacaatttactgtgacaaaccacacaaattcacggccatatc 237  Q
    || | ||||||||||||||||||||   |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||    
T  62505 cactgaggatggcatatgaactcgacgtccgccaacacggtgacgaatatcgcacacccacaatttactgtgacaaaccacacaaattcatggccatttc 62406  T
Q  238 tagtcccacaatccaaaatcgatcacgtgaccgaatc-----aaattttttaaaaatggcaacaatccaaagtagtccaatcctttgacgcggtagatgc 332  Q
    ||| ||||||||||||||||||||||| || ||||||        ||||||  |||  ||||||| ||||||  ||| |||||||||| ||  ||| |||    
T  62405 tagccccacaatccaaaatcgatcacgagatcgaatcttttttttttttttttaaacagcaacaacccaaagccgtcaaatcctttgatgcaataggtgc 62306  T
Q  333 aaaactgaatcgtgaaaacctg 354  Q
    ||||||||||||||||||||||    
T  62305 aaaactgaatcgtgaaaacctg 62284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 17648806 - 17648960
Alignment:
Q  9 caaatgcttgaaaatgggggtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaactgatcaactgactaattagccatttctggccca 108  Q
    ||||||||||||| |||| ||| |||||||||||||||| |||||||||||| ||||| |||| |||||||||  ||| |||||||||||||||||||||    
T  17648806 caaatgcttgaaagtgggtgtgaattcgaccgccaacacagtaattaacgaactcacgtgcactaactgatcaggtgattaattagccatttctggccca 17648905  T
Q  109 catcaagcgaacatacaaacacagccgaggcacattaaggatggcatatgaactc 163  Q
    |||||||| ||||||||||| |||| |||||||||| ||||||||||||||||||    
T  17648906 catcaagcaaacatacaaacccagctgaggcacattgaggatggcatatgaactc 17648960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 18464808 - 18464741
Alignment:
Q  7 gacaaatgcttgaaaatgggg-gtggattcgaccgccaacacggtaattaacgaattcacgcgcacca 73  Q
    |||| |||||||||| ||||| ||||||||||||||| ||||||||| |||||||| |||||||||||    
T  18464808 gacagatgcttgaaagtggggagtggattcgaccgccgacacggtaaataacgaatccacgcgcacca 18464741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 18464711 - 18464657
Alignment:
Q  88 taattagccatttctggcccacatcaagcgaacatacaaacacagccgaggcaca 142  Q
    |||| |||||||||||||||||||||||||||||||||  |||| || |||||||    
T  18464711 taatcagccatttctggcccacatcaagcgaacatacaggcacaacctaggcaca 18464657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 3730511 - 3730389
Alignment:
Q  3 cacagacaaatgcttgaaaatgggg-gtggattcgaccgccaacacggtaattaacgaattcacgcgcacca-actgatcaactgactaattagccattt 100  Q
    ||||||||||| ||||||| ||||| ||||||| || |||||||| ||||| |||||||| ||||||||| |   ||||||  | | |||| ||||||||    
T  3730511 cacagacaaattcttgaaagtggggagtggatttgaacgccaacatggtaa-taacgaatccacgcgcactacgatgatca--tcattaatcagccattt 3730415  T
Q  101 ctggcccacatcaagcgaacatacaa 126  Q
    |||||| ||| ||||||| |||||||    
T  3730414 ctggccaacaacaagcgatcatacaa 3730389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 12498785 - 12498739
Alignment:
Q  31 gattcgaccgccaacacggtaattaacgaattcacgcgcaccaactg 77  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||||    
T  12498785 gattcaaccgccaacacggtaattaacaaattcacacgcactaactg 12498739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 18381429 - 18381383
Alignment:
Q  31 gattcgaccgccaacacggtaattaacgaattcacgcgcaccaactg 77  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||||    
T  18381429 gattcaaccgccaacacggtaattaacaaattcacacgcactaactg 18381383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 22935541 - 22935508
Alignment:
Q  28 gtggattcgaccgccaacacggtaattaacgaat 61  Q
    |||||||||||||||||||||||| |||||||||    
T  22935541 gtggattcgaccgccaacacggtagttaacgaat 22935508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 9893943 - 9893864
Alignment:
Q  3 cacagacaaatgcttgaaaatgggggtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaactgatcaac 83  Q
    |||||||||||| |||||| ||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||    
T  9893943 cacagacaaatgtttgaaagtgggggtggattcgatcgcca-cacgataattaacgaattcacgcgcaccaactgatcaac 9893864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 17419108 - 17419151
Alignment:
Q  32 attcgaccgccaacacggtaattaacgaattcacgcgcaccaac 75  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||    
T  17419108 attcgaccgccaacacggtaattagcgaatccacacgcaccaac 17419151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 61
Target Start/End: Original strand, 30960874 - 30960905
Alignment:
Q  30 ggattcgaccgccaacacggtaattaacgaat 61  Q
    ||||||||||||||||||||||||||||||||    
T  30960874 ggattcgaccgccaacacggtaattaacgaat 30960905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 21292373 - 21292300
Alignment:
Q  3 cacagacaaatgcttgaaaatgggg-gtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaac 75  Q
    |||| ||| ||||||| || ||||| ||||| | ||||||||||||||||||||||||||| || |||||||||    
T  21292373 cacaaacagatgcttgcaagtggggagtggacttgaccgccaacacggtaattaacgaattaacacgcaccaac 21292300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 37573537 - 37573586
Alignment:
Q  28 gtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaactg 77  Q
    ||||||||||||||||||||||||| |||| ||||||||  |||||||||    
T  37573537 gtggattcgaccgccaacacggtaactaacaaattcacgatcaccaactg 37573586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 4110 - 4064
Alignment:
Q  31 gattcgaccgccaacacggtaattaacgaattcacgcgcaccaactg 77  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||||    
T  4110 gattcaaccgccaacacggtaattaacaaattcacacgcactaactg 4064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 194726 - 194680
Alignment:
Q  31 gattcgaccgccaacacggtaattaacgaattcacgcgcaccaactg 77  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||||    
T  194726 gattcaaccgccaacacggtaattaacaaattcacacgcactaactg 194680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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