View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12560_low_9 (Length: 321)

Name: NF12560_low_9
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12560_low_9
NF12560_low_9
[»] chr1 (1 HSPs)
chr1 (1-297)||(12722980-12723276)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 12722980 - 12723276
Alignment:
Q  1 atttcttctccaaatatgagttgtggagaggtaggaaattcaattggaggaggtgannnnnnngtgactatagttgtgactttggaataatattgatcat 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  12722980 atttcttctccaaatatgagttgtggtgaggtaggaaattcaattggaggaggtgatttttttgtgactatagttgtgactttggaataatattgatcat 12723079  T
Q  101 catgacttggagcagtgatttggtattccttagttggtgatttttctagtaggaaggtgtttgttttcttctctacttgtttttgtttcctcatcatcat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  12723080 catgacttggagcagtgatttggtattccttagttggtgatttttctagtaggaaggtgtttgttttcttctctacttgtttctgcttcctcatcatcat 12723179  T
Q  201 ttttatgatcacttatttgaacacacacctattgctatttttagctctatttctttggtgcatgtagctaatggctagacattgtggagaatatata 297  Q
    | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12723180 tattatgatcacttatttgatcacacacctattgctatttttagctctatttctttggtgcatgtagctaatggctagacattgtggagaatatata 12723276  T

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