View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12561_high_2 (Length: 613)
Name: NF12561_high_2
Description: NF12561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12561_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 18 - 613
Target Start/End: Complemental strand, 46667137 - 46666537
Alignment:
| Q |
18 |
agatatatatagtcaatttaattaaaaggttagttcacaatatgaatgacataaaaaataatagtatagttattattaagaaagcaagagtatagtaccc |
117 |
Q |
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| T |
46667137 |
agatagatatagtcaatttaattaaaaggttagttcacaatatgaatgacataaaaaataatagtatagttattattaagaaagcaagagtatagtaccc |
46667038 |
T |
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| Q |
118 |
gatctgccattatatgttgcttttcactattgttgaataatgctgatttaaattcttcctacaaatnnnnnnncacacataatcgcattaattaagggct |
217 |
Q |
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| T |
46667037 |
gatctgccattatatgttgcttttcactattgttgaataatgctgatttaaattcttcctacaaataaaaaa-cacacataatcgcattaattaagggct |
46666939 |
T |
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| Q |
218 |
acaagttccatgtgatcgaagaaaaaacaagcataatattctaacaatcaaaccaaaatgttaacagcttatatatacaatataatttgtagaaaaagcc |
317 |
Q |
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| T |
46666938 |
acaagttccatgtgatcgaagaaaaaacaagcataatattctaacaatcaaaccaaaatgttaacagcttatatatacaatataatttgtagaaaaagcc |
46666839 |
T |
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| Q |
318 |
tatgcagaaattaaatgtatagtagtaccttgcttatttctccattagcgacagttgaattgttgatgctcttaaaaagctctgctaatgcttcaacatc |
417 |
Q |
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| T |
46666838 |
tatgcagaaattaaatgtatagtagtaccttgcttatttctccattagcgacagttgaattgttgatgctcttaaaaagctctgctaatgcttcaacatc |
46666739 |
T |
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| Q |
418 |
attgtgagagtctggaaaaccaaaaatttgtacgcaagtttatttaaactacaaaactgtctagcaaaaataactcacaatct--------tatatatat |
509 |
Q |
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| T |
46666738 |
attgtgagagtctggaaaaccaaaaatttgtacgcaagtttatttaaactacaaaactgtctagcaaaaataact--caatcttatatatatatatatat |
46666641 |
T |
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| Q |
510 |
catagaaatatacaagaattaattaaagcttaattaacataatctaattggattaaccgatagacatacaagcagtctgtgatgcaagaattgccggatc |
609 |
Q |
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| T |
46666640 |
catagaaatatacaagaattaattaaagcttaattaacataatctaattggattaaccgatagacatacaagcagtctgtgatgcaagaattgccggatc |
46666541 |
T |
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| Q |
610 |
ctcc |
613 |
Q |
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| T |
46666540 |
ctcc |
46666537 |
T |
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