View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12561_high_4 (Length: 365)
Name: NF12561_high_4
Description: NF12561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12561_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 9 - 350
Target Start/End: Complemental strand, 8370111 - 8369770
Alignment:
| Q |
9 |
agcacagaaaatgcaataaacgcgttaagtgagaaatactactaaataggactactacatattctcatttattattannnnnnnnnnnnngagggaaaat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8370111 |
agcacagaaaatgcaataaacgcgttaagtgagaaatactactaaataggactactacatattctcatttattattatttatttttttttgagggaaaat |
8370012 |
T |
|
| Q |
109 |
attctcatatattcttaaatggtcaaagcaaggttagtaacaaatgaaacaaacacattcaatcaaaaggaaccttaacaaatgattattgcattttagt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8370011 |
attctcatatattcttaaatggtcaaagcaaggttagtaacaaatgaaacaaacacattcaatcaaaaggaaccttaacaaatgattattgcattttagt |
8369912 |
T |
|
| Q |
209 |
accaaacttacatgtcgtctacaattttcttcataacaattctgcatatacctacgaaaaattttagtctcattatccaaactgacctcgaagggatctt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8369911 |
accaaacttacatgtcgtctacaattttcttcataacaattctgcatatacctacgaaaaattttagtctcattatccaaactgtcctcgaagggatctt |
8369812 |
T |
|
| Q |
309 |
ttccatattcaactttttgggcatctgctccctccacttttt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8369811 |
ttccatattcaactttttgggcatctgctccctccacttttt |
8369770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 110 - 307
Target Start/End: Complemental strand, 6932807 - 6932609
Alignment:
| Q |
110 |
ttctcatatattcttaaatggtcaaagcaaggttag-taacaaatgaaacaaacacattcaatcaaaaggaaccttaacaaatgattattgcattttagt |
208 |
Q |
| |
|
||||||| ||||| |||||||| ||| || || | | ||| |||||||||||| ||||| || |||||||||| |||||||||||||||||||| |||| |
|
|
| T |
6932807 |
ttctcatttattcataaatggtaaaaccaggggttgataaaaaatgaaacaaatacattaaaacaaaaggaactttaacaaatgattattgcatcttagc |
6932708 |
T |
|
| Q |
209 |
accaaacttacatgtcgtctacaattttcttcataacaattctgcatatacctacgaaaaattttagtctcattatccaaactgacctcgaagggatct |
307 |
Q |
| |
|
||| |||||||| || |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| || ||| ||||||||| |
|
|
| T |
6932707 |
accggacttacatatcttctacattggtcttcataacaattctgcatatatgtacgaaaaattttagtctcattatctaaagtgtgctcaaagggatct |
6932609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University