View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12561_high_5 (Length: 353)
Name: NF12561_high_5
Description: NF12561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12561_high_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 924960 - 924623
Alignment:
| Q |
17 |
agatcatggtaataagagagaagacaccaaattaactaacattagacataatttattaaaagtgattttcaattgttggttattggatagagccaagatt |
116 |
Q |
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| T |
924960 |
agatcatggtaataagagagaagacaccaaattaactaacattagacataatttattaaaagtgattttcaattgttggttattggatagagccaagatt |
924861 |
T |
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| Q |
117 |
tagaataaaataaaatagtctaaattattctgagttcttttaatgataa-nnnnnnnnnnnnnnncagacttaatgataattttgttgataacgtagcat |
215 |
Q |
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| T |
924860 |
tagaataaaataaaatagtctaaattattctgagttcttttaatgataatttttttttttttttacagtcttaatgataattttgttgataacgtagcat |
924761 |
T |
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| Q |
216 |
aggggtcaaaacctgtccaaaaataacttaggtgttggagtatatatgatttagataaaaacaattacattttgtattttgatcacaaatannnnnnngg |
315 |
Q |
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| T |
924760 |
aggggtcaaaacctgtccaaaaataacttaggtgttggagtatatatgatttagataaaaacaattacattttgtattttgatcacaaatatttttttgg |
924661 |
T |
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| Q |
316 |
ttaattgcgatgattatagttatacatcaataatggat |
353 |
Q |
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| T |
924660 |
ttaattgcgatgattatagttatatatcaataatggat |
924623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 39243818 - 39243758
Alignment:
| Q |
57 |
attagacataatttattaaaagtgattttcaattgttggttattggatagagccaagattt |
117 |
Q |
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| T |
39243818 |
attagaaataatttattaaaaatgcttttcaattgttggttattgtatagagtcaatattt |
39243758 |
T |
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