View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12561_low_1 (Length: 945)
Name: NF12561_low_1
Description: NF12561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12561_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 894; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 894; E-Value: 0
Query Start/End: Original strand, 15 - 928
Target Start/End: Complemental strand, 50407944 - 50407031
Alignment:
| Q |
15 |
catcaaagttgaataatatttcaacccaaacaactccgaaattatggcaaaaaccaatggccattgtgcaccaaaacaaaatccaatgattactgaagca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50407944 |
catcaaagttgaataatatttcaacccaaacaactccgaaattatggcaaaaaccaatggccattgtgcaccaaaacaaaatccaatgattactgaagca |
50407845 |
T |
|
| Q |
115 |
aaatagaggccattttgcacatcaaaggctatcaataagtgaccgacacaggataaaaacataatcaatgtgaacatgagtggtcgtggaaatttgtact |
214 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50407844 |
aaatagatgccattttgcacatcaaaggctatcaataagtgaccgacacaggataaaaacataatcaatgtgaacatgagtggtcgtggaaatttgtact |
50407745 |
T |
|
| Q |
215 |
ttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgcttgtttttgggta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50407744 |
ttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgcttgtttttgggta |
50407645 |
T |
|
| Q |
315 |
tccgagtgaggttccaatttgacctaaattatcaattgctgttaaagttccaccaacaccacatgtgccagcaaagaatagcaataacatgtctatgctg |
414 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50407644 |
tccaagtgaggttccaatttgacctaaattatcaattgctgttaaagttccaccaacaccacatgtgccagcaaagaatagcaataacatgtctatgctg |
50407545 |
T |
|
| Q |
415 |
aaaagggcttgtaatatagtaaaatcttcaccttgttcaggtggactaaaaatattttgccaccatctagtttcttttacttcaacaacacaaaccattg |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50407544 |
aaaagggcttgtaatatagtaaaatcttcaccttgttcaggtggactaaaaatattttgccaccatctagtttcttttacttcaacaacacaaaccattg |
50407445 |
T |
|
| Q |
515 |
cattagtatcacaattttttgctgcagactctttcacttcttgatcagttactattttaaccgaaaatggatcaacaaatgcaagcttttgactcttttt |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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|
| T |
50407444 |
cattagtatcacaattttttgctgcagactctttcacttcttgatcagttactattttaactgaaaatggatcgacaaatgcaagcttttgactcttttt |
50407345 |
T |
|
| Q |
615 |
ctgttcaacaaagacaacagcaagaggtaggaacagcaaaattagaacaactgaagcacttccaatatactcactctgtttaaaagacacttttttctgt |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50407344 |
ctgttcaacaaagacaacagcaagaggtaggaacagcaaaattagaacaactgaagcacttccaatatactcactctgtttaaaagacacttttttctgt |
50407245 |
T |
|
| Q |
715 |
aatatgatcataaccattaaaaaaccagctagaccgagtgaaatatacaaaaacttgtaaaaaacaccaagttcgttgttctgtttgaccggtttcatgt |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
50407244 |
aatatgatcataaccattaaaaaaccagctagaccgagtgaaatatacaaaaacttgtaaaaaacaccaagttcgttgttctgtttaaccggtttcatgt |
50407145 |
T |
|
| Q |
815 |
atcgaattgttcgaagaaaaagaaaggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaag |
914 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50407144 |
atcgaattgttcgaagaaaaagaaaggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaag |
50407045 |
T |
|
| Q |
915 |
ttgtgtgataatag |
928 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
50407044 |
ttgtgtgataatag |
50407031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 58 - 377
Target Start/End: Complemental strand, 50385872 - 50385553
Alignment:
| Q |
58 |
atggcaaaaaccaatggccattgtgcaccaaaacaaaatccaatgattactgaagcaaaatagaggccattttgcacatcaaaggctatcaataagtgac |
157 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||| || |||||||| | ||||| || | | |||||||||| ||||||| | ||| | |
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|
| T |
50385872 |
atggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagctacgtagagaccctctggcacatcaaatgctatcagaaggtgtc |
50385773 |
T |
|
| Q |
158 |
cgacacaggataaaaacataatcaatgtgaacatgagtggtcgtggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcc |
257 |
Q |
| |
|
| ||||| || | ||| | | || || | ||| || || || |||||| |||||||||||| || ||||||||||||||| || || ||||| | ||| |
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|
| T |
50385772 |
caacacatgagacaaagagtgttaaagtaagcataagaggacgaggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcc |
50385673 |
T |
|
| Q |
258 |
tagataattccaaatactcactaatgaaacaaatgtgcttatgcttgtttttgggtatccgagtgaggttccaatttgacctaaattatcaattgctgtt |
357 |
Q |
| |
|
||||||||||||||| || ||||| || ||||| |||||||||||| | ||||| |||| ||||| ||||| || ||||| | ||||||||||||||| |
|
|
| T |
50385672 |
tagataattccaaatgcttactaaagacacaaaagtgcttatgcttttctttggatatcttagtgatgttcctatctgaccaagattatcaattgctgtc |
50385573 |
T |
|
| Q |
358 |
aaagttccaccaacaccaca |
377 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
50385572 |
aaagttcctccaacaccaca |
50385553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 58 - 377
Target Start/End: Complemental strand, 50394291 - 50393972
Alignment:
| Q |
58 |
atggcaaaaaccaatggccattgtgcaccaaaacaaaatccaatgattactgaagcaaaatagaggccattttgcacatcaaaggctatcaataagtgac |
157 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||| || |||||||| | ||||| || | | |||||||||| ||||||| | ||| | |
|
|
| T |
50394291 |
atggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagctacgtagagaccctctggcacatcaaatgctatcagaaggtgtc |
50394192 |
T |
|
| Q |
158 |
cgacacaggataaaaacataatcaatgtgaacatgagtggtcgtggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcc |
257 |
Q |
| |
|
| ||||| || | ||| | | || || | ||| || || || |||||| |||||||||||| || ||||||||||||||| || || ||||| | ||| |
|
|
| T |
50394191 |
caacacatgagacaaagagtgttaaagtaagcataagaggacgaggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcc |
50394092 |
T |
|
| Q |
258 |
tagataattccaaatactcactaatgaaacaaatgtgcttatgcttgtttttgggtatccgagtgaggttccaatttgacctaaattatcaattgctgtt |
357 |
Q |
| |
|
||||||||||||||| || ||||| || ||||| |||||||||||| | ||||| |||| ||||| ||||| || ||||| | ||||||||||||||| |
|
|
| T |
50394091 |
tagataattccaaatgcttactaaagacacaaaagtgcttatgcttttctttggatatcttagtgatgttcctatctgaccaagattatcaattgctgtc |
50393992 |
T |
|
| Q |
358 |
aaagttccaccaacaccaca |
377 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
50393991 |
aaagttcctccaacaccaca |
50393972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 58 - 447
Target Start/End: Complemental strand, 50391017 - 50390628
Alignment:
| Q |
58 |
atggcaaaaaccaatggccattgtgcaccaaaacaaaatccaatgattactgaagcaaaatagaggccattttgcacatcaaaggctatcaataagtgac |
157 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||||||||| || || |||||||| | |||||| || | | |||||||||| |||||||| | ||| | |
|
|
| T |
50391017 |
atggcaaaaagtaacggccattgagcaccaaaacaaaatccgataataactgaagctacatagagaccctgtggcacatcaaatgctatcaaaaggtgtc |
50390918 |
T |
|
| Q |
158 |
cgacacaggataaaaacataatcaatgtgaacatgagtggtcgtggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcc |
257 |
Q |
| |
|
| ||||| || | ||| | | |||| | | ||| || || || |||||| |||||||||||| || ||||||||||||||| || || ||||| | ||| |
|
|
| T |
50390917 |
ccacacaagagacaaagagagtcaaagaaagcataagaggacgaggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcc |
50390818 |
T |
|
| Q |
258 |
tagataattccaaatactcactaatgaaacaaatgtgcttatgcttgtttttgggtatccgagtgaggttccaatttgacctaaattatcaattgctgtt |
357 |
Q |
| |
|
||||||||||||||| || ||||| || ||||| |||||||||||| | ||||| |||| ||||| ||||| || ||||| | |||||||| |||||| |
|
|
| T |
50390817 |
tagataattccaaatgcttactaaagacacaaaagtgcttatgcttttctttggatatcttagtgatgttcctatctgaccaagattatcaactgctgtc |
50390718 |
T |
|
| Q |
358 |
aaagttccaccaacaccacatgtgccagcaaagaatagcaataacatgtctatgctgaaaagggcttgtaatatagtaaaatcttcacct |
447 |
Q |
| |
|
|| | |||||||| |||||| | | || | ||||| | |||||||||||||||||||| ||||| | ||| ||| |||| |||||| |
|
|
| T |
50390717 |
aatgatccaccaataccacaaatacatgccacaaatagtatcaacatgtctatgctgaaaagtgcttgaagtatcgtataatcctcacct |
50390628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 805 - 923
Target Start/End: Complemental strand, 50385122 - 50385004
Alignment:
| Q |
805 |
ggtttcatgtatcgaattgttcgaagaaaaagaaaggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatag |
904 |
Q |
| |
|
|||||||| |||||||| |||||||||||| ||| ||||| ||||| ||||||||| |||||| |||||||||||| |||| ||||||| ||||||||| |
|
|
| T |
50385122 |
ggtttcatatatcgaatggttcgaagaaaagcaaacgaaatagcagcaggaagccaaccaataaacaaaatcaaagcctttgtgtcatcataataaatag |
50385023 |
T |
|
| Q |
905 |
cagaataaagttgtgtgat |
923 |
Q |
| |
|
|||| ||||| |||||||| |
|
|
| T |
50385022 |
cagagtaaagctgtgtgat |
50385004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 805 - 923
Target Start/End: Complemental strand, 50393541 - 50393423
Alignment:
| Q |
805 |
ggtttcatgtatcgaattgttcgaagaaaaagaaaggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatag |
904 |
Q |
| |
|
|||||||| || ||||| |||||||||||| ||| ||||| ||||| ||||||||| | |||| |||||||||||| |||| ||||||| | ||||||| |
|
|
| T |
50393541 |
ggtttcatataacgaatggttcgaagaaaagcaaaagaaatagcagcaggaagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatag |
50393442 |
T |
|
| Q |
905 |
cagaataaagttgtgtgat |
923 |
Q |
| |
|
|||| ||||| |||||||| |
|
|
| T |
50393441 |
cagagtaaagctgtgtgat |
50393423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 853 - 928
Target Start/End: Complemental strand, 50390219 - 50390144
Alignment:
| Q |
853 |
ggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatag |
928 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||| ||||| | ||||||||||||| |||||||||||||| |||| |
|
|
| T |
50390219 |
ggaagccaacctataagcaaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatag |
50390144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 870 - 923
Target Start/End: Complemental strand, 24223995 - 24223942
Alignment:
| Q |
870 |
caaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgat |
923 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
24223995 |
caaaatcaaagcctttgtgtcatcataataaatagcagagtaaagttgtgtgat |
24223942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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