View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12561_low_12 (Length: 233)

Name: NF12561_low_12
Description: NF12561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12561_low_12
NF12561_low_12
[»] chr5 (17 HSPs)
chr5 (18-224)||(30060819-30061025)
chr5 (18-224)||(30750093-30750299)
chr5 (18-218)||(30400530-30400730)
chr5 (24-222)||(29853763-29853961)
chr5 (25-224)||(30206972-30207171)
chr5 (18-222)||(29872626-29872830)
chr5 (37-216)||(30241850-30242029)
chr5 (18-222)||(30337975-30338179)
chr5 (18-222)||(30676738-30676942)
chr5 (18-222)||(30436268-30436469)
chr5 (24-222)||(30483853-30484051)
chr5 (18-222)||(30712878-30713079)
chr5 (24-129)||(17418049-17418154)
chr5 (104-220)||(30475829-30475945)
chr5 (37-216)||(30521094-30521273)
chr5 (37-216)||(30561434-30561613)
chr5 (25-162)||(17983410-17983547)
[»] chr7 (1 HSPs)
chr7 (18-222)||(26707784-26707988)
[»] chr4 (3 HSPs)
chr4 (18-218)||(20296032-20296232)
chr4 (38-216)||(52352417-52352595)
chr4 (25-165)||(13617105-13617244)
[»] chr1 (2 HSPs)
chr1 (25-216)||(7581176-7581367)
chr1 (25-154)||(7099941-7100070)
[»] chr3 (1 HSPs)
chr3 (38-93)||(25293411-25293466)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 30061025 - 30060819
Alignment:
Q  18 tgtcttgtctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaagga 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30061025 tgtcttctctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacatcacaaagaagagcgtgctgatctcgtggcaataggaaagga 30060926  T
Q  118 gatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagac 217  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30060925 gatagtaaagaaatgcaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagac 30060826  T
Q  218 agtgaac 224  Q
    |||||||    
T  30060825 agtgaac 30060819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 30750299 - 30750093
Alignment:
Q  18 tgtcttgtctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaagga 117  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30750299 tgtcttctctctctgatagtgaatgttggctgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaagga 30750200  T
Q  118 gatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagac 217  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30750199 gatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagat 30750100  T
Q  218 agtgaac 224  Q
    |||||||    
T  30750099 agtgaac 30750093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 30400730 - 30400530
Alignment:
Q  18 tgtcttgtctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaagga 117  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||||||| |||||||| | |||||||||||| || || || ||||||||||||||    
T  30400730 tgtctggtctctctgatagtgaatgttggttgttgttcaaagaatatgcattgggacattatagagaagagcgtgcagaacttgtagcaataggaaagga 30400631  T
Q  118 gatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagac 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||| |  ||||||||||||||| | |||||||||    
T  30400630 gatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattgggaggtttgatgagctcaaggaatggagaaaaggaatggcttgatattaaagac 30400531  T
Q  218 a 218  Q
    |    
T  30400530 a 30400530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 29853961 - 29853763
Alignment:
Q  24 gtctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagt 123  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||| ||| || |||||||| | |  | || |||| ||||||||||||||| ||    
T  29853961 gtctctctgatagtgaatgttggttgttgttcaaagaatatgcatttggatatttcagagaagagcatacaaagcttgtggaaataggaaaggagattgt 29853862  T
Q  124 aaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtga 222  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||| || ||||||||||||||| | ||||||||||||||    
T  29853861 aaagaaatgtaatggattgcctcttgcagcaaaaacattgggaggtttgatgagctcaaggaatgaagaaaaggaatggcttgatattaaagacagtga 29853763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 30207171 - 30206972
Alignment:
Q  25 tctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagta 124  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||  | | |||||||||||| || || |||| |||||||||||||||||||    
T  30207171 tctctctgataatgaatgttggttgttgttcaaacaatatgcatttggacaaaatagagaagagcgtgcagagcttgtggaaataggaaaggagatagta 30207072  T
Q  125 aagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaac 224  Q
    ||||||||| |||||||||||||||||||| || |||||||| || ||||||  |||||||| || ||||| ||||||||| |||||||||| |||||||    
T  30207071 aagaaatgtgatggattgcctcttgcagcacaagcattgggaggtctaatgagttcaaggaatgaagaaaaagaatggcttgaaattaaagagagtgaac 30206972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 29872830 - 29872626
Alignment:
Q  18 tgtcttgtctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaagga 117  Q
    ||||| || ||||||||||||||||||||||||||||| || |||||||||||||| |||||| |||||||| | |  | ||  ||| ||||||||||||    
T  29872830 tgtctggtatctctgatagtgaatgttggttgttgttcaaagaatatgcatttggatattacagagaagagcatacaaagcttatggaaataggaaagga 29872731  T
Q  118 gatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagac 217  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||| || ||||||||||||||| | ||||| |||    
T  29872730 gattgtaaagaaatgtaatggattgcctcttgcagcaaaagcattgggaggtttgatgagctcaaggaatgaagaaaaggaatggcttgatattaaggac 29872631  T
Q  218 agtga 222  Q
    |||||    
T  29872630 agtga 29872626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 37 - 216
Target Start/End: Original strand, 30241850 - 30242029
Alignment:
Q  37 tgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagtaaagaaatgtaat 136  Q
    ||||||||||||||||||| |||||||||||||||||||||| | ||||||| || |  | || |||  ||||||||||||||| |||||||||||||||    
T  30241850 tgaatgttggttgttgttcaaacaatatgcatttggacattatagagaagagagtacaaagcttgtgaaaataggaaaggagattgtaaagaaatgtaat 30241949  T
Q  137 ggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaaga 216  Q
    ||||||||||||||||| ||| |||||||| ||||||||| ||||||||| || ||| ||||||||||| ||||||||||    
T  30241950 ggattgcctcttgcagcgaaagcattgggaggtttaatgagctcaaggaatgaagaagaggaatggcttgaaattaaaga 30242029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 30337975 - 30338179
Alignment:
Q  18 tgtcttgtctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaagga 117  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||| ||||||||  || | |||||||||||  | |  | || |||| ||| ||||||||    
T  30337975 tgtctggtctctctgatagtgattgttggttgttgttcaaacaacatgcatttaaacgtaacaaagaagaggatacaaagcttgtggaaattggaaagga 30338074  T
Q  118 gatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagac 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||  ||||| ||| || ||||||||||||||| | |||||||||    
T  30338075 gatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttaatggtctcaatgaatgaagaaaaggaatggcttgatattaaagac 30338174  T
Q  218 agtga 222  Q
    |||||    
T  30338175 agtga 30338179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 30676738 - 30676942
Alignment:
Q  18 tgtcttgtctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaagga 117  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||| ||||||||  || | |||||||||||  | |  | || |||| ||| ||||||||    
T  30676738 tgtctagtctctctgatagtgattgttggttgttgttcaaacaacatgcatttaaacgtaacaaagaagaggatacaaagcttgtggaaattggaaagga 30676837  T
Q  118 gatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagac 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||  |||| |||| ||||||||| || || |||||||||||| | |||||||||    
T  30676838 gatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttgatgagctcaaggaatgaagagaaggaatggcttgatattaaagac 30676937  T
Q  218 agtga 222  Q
    |||||    
T  30676938 agtga 30676942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 30436469 - 30436268
Alignment:
Q  18 tgtcttgtctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaagga 117  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||| |||||||| ||| |||||||||   || | |  |  | |||| ||| ||||||||    
T  30436469 tgtctggtctctctgatagtgactgttggttgttgttcaaacaacatgcatttagacgttacaaaga---gcatacaaagtttgtggaaattggaaagga 30436373  T
Q  118 gatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagac 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||  |||| |||| ||||||||| || ||||||||||||||| | |||||||||    
T  30436372 gatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttgatgagctcaaggaatgaagaaaaggaatggcttgatattaaagac 30436273  T
Q  218 agtga 222  Q
    |||||    
T  30436272 agtga 30436268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 30484051 - 30483853
Alignment:
Q  24 gtctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagt 123  Q
    ||||||| |||||||| ||||||||||||||| ||||| |||||||| ||| | |||||||||||| | |  | || ||||  || ||||||||||||||    
T  30484051 gtctctcagatagtgattgttggttgttgttcaaacaacatgcatttagacgtaacaaagaagagcatacaaagcttgtggagattggaaaggagatagt 30483952  T
Q  124 aaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtga 222  Q
    |||||||||||||||||||||||||||||||||| |||||||  ||||||||  ||||| ||| || ||||||||||||||| | ||||||||||||||    
T  30483951 aaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttaatggtctcaatgaatgaagaaaaggaatggcttgatattaaagacagtga 30483853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 30712878 - 30713079
Alignment:
Q  18 tgtcttgtctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaagga 117  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||| |||||||| ||| |||||||||   || | |  |  | |||| ||||||||||||    
T  30712878 tgtctggtctctctgatagtgactgttggttgttgttcaaacaacatgcatttagacgttacaaaga---gcatacaaagtttgtggaaataggaaagga 30712974  T
Q  118 gatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagac 217  Q
    ||||| ||||||||||||||||||||| |||||||||||| |||||||  |||| |||| ||||||||| || ||||| ||||||||| | |||||||||    
T  30712975 gatagcaaagaaatgtaatggattgccacttgcagcaaaagcattggggggtttgatgagctcaaggaatgaagaaaatgaatggcttgatattaaagac 30713074  T
Q  218 agtga 222  Q
    |||||    
T  30713075 agtga 30713079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 17418049 - 17418154
Alignment:
Q  24 gtctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagt 123  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||| || ||||||||||||| |  || || ||  ||||||| ||||| |||||    
T  17418049 gtctctctgataatgaatgttggttgttgttcaaacaatatgcatttggaaatgacaaagaagagcgcgaggaacttgtcccaataggcaaggatatagt 17418148  T
Q  124 aaagaa 129  Q
    ||||||    
T  17418149 aaagaa 17418154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 30475945 - 30475829
Alignment:
Q  104 gcaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggc 203  Q
    |||||||| |||| |||||||||||| |||   |||||||||||||||||| || |||||||| || |||||  ||||||||  |||||||| |||||||    
T  30475945 gcaataggtaaggcgatagtaaagaagtgtggaggattgcctcttgcagcacaagcattgggaggtctaatgcgctcaaggagtgatgaaaatgaatggc 30475846  T
Q  204 ttaaaattaaagacagt 220  Q
    || ||||||||||||||    
T  30475845 ttgaaattaaagacagt 30475829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 216
Target Start/End: Original strand, 30521094 - 30521273
Alignment:
Q  37 tgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagtaaagaaatgtaat 136  Q
    ||||||||||||||||||| |||||||||||||| ||||| | | |||  |||   |||| || ||  |||||||||| |||||||||||||| |||       
T  30521094 tgaatgttggttgttgttcaaacaatatgcatttcgacatgatagagagcagcagactgagcttgtcacaataggaaaagagatagtaaagaagtgtggg 30521193  T
Q  137 ggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaaga 216  Q
    |||||||||||||||||| || |||||||| |  |||||  ||||||||  |  ||||| ||||||||| ||||||||||    
T  30521194 ggattgcctcttgcagcacaagcattgggaggcctaatgtgctcaaggagtggagaaaaagaatggcttgaaattaaaga 30521273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 216
Target Start/End: Original strand, 30561434 - 30561613
Alignment:
Q  37 tgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagtaaagaaatgtaat 136  Q
    ||||||||||||||||||| |||||||||||||| ||||| | | |||  |||   |||| || ||  |||||||||| |||||||||||||| |||       
T  30561434 tgaatgttggttgttgttcaaacaatatgcatttcgacatgatagagagcagcagactgagcttgtcacaataggaaaagagatagtaaagaagtgtggg 30561533  T
Q  137 ggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaaga 216  Q
    |||||||||||||||||| || |||||||| |  |||||  ||||||||  |  ||||| ||||||||| ||||||||||    
T  30561534 ggattgcctcttgcagcacaagcattgggaggcctaatgtgctcaaggagtggagaaaaagaatggcttgaaattaaaga 30561613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 17983547 - 17983410
Alignment:
Q  25 tctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagta 124  Q
    ||||||||| | |||||||| |||||||||| |||||||||||||||| ||| | | |||||||| |   || || |||  |||||| ||||||||||||    
T  17983547 tctctctgacaatgaatgttagttgttgttcaaacaatatgcatttgggcatgatagagaagagcctttcgagcttgtgaaaataggcaaggagatagta 17983448  T
Q  125 aagaaatgtaatggattgcctcttgcagcaaaatcatt 162  Q
    || || |||   ||||||||||||||||||||| ||||    
T  17983447 aaaaagtgtggaggattgcctcttgcagcaaaagcatt 17983410  T

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Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 26707988 - 26707784
Alignment:
Q  18 tgtcttgtctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaagga 117  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||| |||||||| ||||||||| |||||||| | |  | || |||| ||||||||||||    
T  26707988 tgtctggtctctctgatagtgactgttggttgttgttcaaacaacatgcatttagacattacagagaagagcatacaaagcttgtggaaataggaaagga 26707889  T
Q  118 gatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagac 217  Q
    ||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||||||  ||||| ||| || ||||||||||||||| | |||||||||    
T  26707888 gatagtaaaaaaatgtaatggattacctcttgcagcaaaagcattgggaggtttaatgttctcaatgaatgaagaaaaggaatggcttgatattaaagac 26707789  T
Q  218 agtga 222  Q
    |||||    
T  26707788 agtga 26707784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 20296032 - 20296232
Alignment:
Q  18 tgtcttgtctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaagga 117  Q
    ||||| |||||||| | ||||| ||||||||||||||| ||||| |||||||| ||||||||| |||||||| | |  | || |||| ||||||||||||    
T  20296032 tgtctggtctctcttacagtgattgttggttgttgttcaaacaacatgcatttagacattacagagaagagcatacaaagcttgtggaaataggaaagga 20296131  T
Q  118 gatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagac 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||  ||||| ||| || ||||||||||||| | | |||||||||    
T  20296132 gatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattgggaggtttaatggtctcaatgaatgaagaaaaggaatggcgtgatattaaagac 20296231  T
Q  218 a 218  Q
    |    
T  20296232 a 20296232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 216
Target Start/End: Complemental strand, 52352595 - 52352417
Alignment:
Q  38 gaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagtaaagaaatgtaatg 137  Q
    ||||||||| |||| ||| ||||||||||||||| |||| | | |||||| || |  || || ||||||||||| || | |||||||||||| |||   |    
T  52352595 gaatgttggctgttattcaaacaatatgcatttgaacatgatatagaagaacgagaagagctagtggcaataggcaaagcgatagtaaagaagtgtgggg 52352496  T
Q  138 gattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaaga 216  Q
    ||||||||||||| ||| || |||| ||| || |||||  |||||| || |  |||||||||||| || ||||||||||    
T  52352495 gattgcctcttgctgcacaagcattaggaggtctaatgcgctcaagaaatggagaaaaggaatgggttgaaattaaaga 52352417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 13617244 - 13617105
Alignment:
Q  25 tctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagta 124  Q
    ||||| |||| ||||||||||||| |||||| ||||||||||||| | |||| | | ||||||| |||  || ||  ||||||||||||||||||||||     
T  13617244 tctctatgatggtgaatgttggttattgttcaaacaatatgcattcgaacatgatagagaagagtgtgtagagct-ttggcaataggaaaggagatagtt 13617146  T
Q  125 aagaaatgtaatggattgcctcttgcagcaaaatcattggg 165  Q
    || || |||   |||||||||||||||| | || |||||||    
T  13617145 aaaaagtgtggaggattgcctcttgcaggacaagcattggg 13617105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 216
Target Start/End: Original strand, 7581176 - 7581367
Alignment:
Q  25 tctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagta 124  Q
    ||||||||||  |||||||||||| |||||| |||||||||||||||||||| | | ||||||| |||| || || ||||||||||| ||||||||||||    
T  7581176 tctctctgatgatgaatgttggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagta 7581275  T
Q  125 aagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaaga 216  Q
    || ||||||   |||||||||||||||||| || |||||||  || ||||| |||||||||  || |||||||||||| || ||||||||||    
T  7581276 aaaaaatgtgcgggattgcctcttgcagcacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaaga 7581367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 7100070 - 7099941
Alignment:
Q  25 tctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagta 124  Q
    ||||||||||  ||| || |||||||||||| |||||||||||||||||||||||| ||||||||||||||| || |||  |||||| ||||||||||||    
T  7100070 tctctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagta 7099971  T
Q  125 aagaaatgtaatggattgcctcttgcagca 154  Q
    || || |||   ||||||||||||||||||    
T  7099970 aaaaagtgtggaggattgcctcttgcagca 7099941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 25293411 - 25293466
Alignment:
Q  38 gaatgttggttgttgttcgaacaatatgcatttggacattacaaagaagagcgtgc 93  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||    
T  25293411 gaatgttggttgttgttcaaacaatatgcatttggacattacaaagatgagtgtgc 25293466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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