View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12561_low_13 (Length: 224)
Name: NF12561_low_13
Description: NF12561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12561_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 52495256 - 52495446
Alignment:
| Q |
19 |
tgattaattagttagctaaccaattttgatgtacctgtcaacaaaacttaatgtctttaccataattttaggtgagaaaaatacgttcatatcattcccc |
118 |
Q |
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| T |
52495256 |
tgattaattagttagctatccaattttgatgtacctgtcaaccaaacttaatgtctttaccataattttaggtgagaaaaatacgttcatatcattcccc |
52495355 |
T |
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| Q |
119 |
tggtttgtaaattatcctgttaaaagataaaaacaattaagaaaaacttaatcaatcattttttatttcaggggatttcagtagcttcatc |
209 |
Q |
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| T |
52495356 |
tggtttgtaaattatcctgttaaaagataaaaacaattaagaaaaacttaatcaatcattttttatttcaggggatttcagtagcttcatc |
52495446 |
T |
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Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 24635507 - 24635314
Alignment:
| Q |
19 |
tgattaattagttagctaaccaattttgatgtacctgtcaacaaaacttaatgtctttaccataattttaggtgagaaaaatacgttcatatcattcccc |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24635507 |
tgattaattagttagctatccaattttgatgtacctgtcaaccaaacttaatgtctttaccataattttaggtgagaaaaatacgttcatatcattcccc |
24635408 |
T |
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| Q |
119 |
tggtttgtaaattatcctgttaaaag-ataaaaacaa--ttaagaaaaacttaatcaatcattttttatttcaggggatttcagtagcttcatc |
209 |
Q |
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|||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24635407 |
tggtttgtaaattatcctgttaaaagaataaaaacaaattaaagaaaaacttaatcaatcattttttatttcaggggatttcagtagcttcatc |
24635314 |
T |
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