View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12561_low_15 (Length: 208)

Name: NF12561_low_15
Description: NF12561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12561_low_15
NF12561_low_15
[»] scaffold0284 (1 HSPs)
scaffold0284 (23-191)||(2254-2422)
[»] chr4 (5 HSPs)
chr4 (21-203)||(6552636-6552819)
chr4 (21-203)||(6553036-6553219)
chr4 (21-203)||(312810-313003)
chr4 (96-162)||(24181727-24181793)
chr4 (73-125)||(6561023-6561075)
[»] chr8 (3 HSPs)
chr8 (21-203)||(41528414-41528597)
chr8 (21-191)||(36754454-36754624)
chr8 (96-154)||(43216917-43216975)
[»] chr3 (3 HSPs)
chr3 (16-185)||(50239963-50240135)
chr3 (96-163)||(14249223-14249290)
chr3 (96-162)||(6437626-6437692)
[»] chr2 (4 HSPs)
chr2 (23-191)||(31967255-31967423)
chr2 (75-114)||(36727631-36727670)
chr2 (88-128)||(36720129-36720169)
chr2 (78-162)||(45054025-45054109)
[»] chr1 (4 HSPs)
chr1 (21-203)||(45919624-45919807)
chr1 (21-203)||(49880278-49880463)
chr1 (82-162)||(16853665-16853745)
chr1 (73-154)||(31088746-31088829)
[»] scaffold0114 (1 HSPs)
scaffold0114 (21-184)||(35140-35303)
[»] chr5 (1 HSPs)
chr5 (21-185)||(9023467-9023631)
[»] scaffold0211 (1 HSPs)
scaffold0211 (21-203)||(19858-20041)
[»] scaffold0191 (1 HSPs)
scaffold0191 (96-162)||(11645-11711)
[»] scaffold0216 (1 HSPs)
scaffold0216 (73-125)||(29157-29209)
[»] scaffold0074 (1 HSPs)
scaffold0074 (75-162)||(32751-32837)
[»] chr6 (4 HSPs)
chr6 (21-68)||(6525069-6525116)
chr6 (83-162)||(18089942-18090021)
chr6 (81-162)||(26595897-26595978)
chr6 (73-161)||(31737166-31737254)
[»] chr7 (3 HSPs)
chr7 (75-129)||(2929478-2929532)
chr7 (96-162)||(6190585-6190651)
chr7 (73-161)||(29912628-29912716)


Alignment Details
Target: scaffold0284 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 2422 - 2254
Alignment:
Q  23 attgatggactattttagcctcacatgtagccaatgtctagatctgtctctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatata 122  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2422 attgatggactattttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatata 2323  T
Q  123 cctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg 191  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  2322 cctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtgatg 2254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 6552636 - 6552819
Alignment:
Q  21 acattgatggactattttagcctcacatgtagccaatgtctagatctgtctctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgata 120  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  6552636 acattgatggactattttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaaaaaacgtataagtgagatgatcgata 6552735  T
Q  121 tacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccatctcattg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||    
T  6552736 tacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgatccaactcattg 6552819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 6553036 - 6553219
Alignment:
Q  21 acattgatggactattttagcctcacatgtagccaatgtctagatctgtctctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgata 120  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  6553036 acattgatggactattttagcctcacatgtatccaatgtctagatctgtccctagatgcaaaagtaaatgttaagaaacatataagtgagatgatcgata 6553135  T
Q  121 tacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccatctcattg 203  Q
    ||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||| |||| |||||||    
T  6553136 tacctaatagactaagattttggatgatggtgtgctgtcaattgtatgattaaccttaacataatgtgatgatccaactcattg 6553219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 312810 - 313003
Alignment:
Q  21 acattgatggactattttagcctcacatgtagccaatgtctagatctgtctc----------tggatgcaaaagtaaatgttaagaaacatataagtgag 110  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  312810 acattgatggactattttagcctcacatgtatccaatgtctcgatctgtctcgatctgtctgtggatgcaaaagtaaatgttaagaaacatataagtgag 312909  T
Q  111 atgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccatctcattg 203  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||    
T  312910 atgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtgatgatccaactcattg 313003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 24181793 - 24181727
Alignment:
Q  96 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 162  Q
    ||||||||||||||||||||| |||||| |||| |  |||| |||||| ||||||| || |||||||    
T  24181793 aaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatatggtgtcaat 24181727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 6561023 - 6561075
Alignment:
Q  73 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacct 125  Q
    ||||| |||||||| |||||||  |||||||||||||||||| | ||||||||    
T  6561023 tggatacaaaagtagatgttaaacaacatataagtgagatgaccaatatacct 6561075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 41528597 - 41528414
Alignment:
Q  21 acattgatggactattttagcctcacatgtagccaatgtctagatctgtctctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgata 120  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41528597 acattgatgtactattttagcctcacatgtatccaatgtctagatatgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgata 41528498  T
Q  121 tacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccatctcattg 203  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| |||||||    
T  41528497 tacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataacatgatgatccaactcattg 41528414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 36754624 - 36754454
Alignment:
Q  21 acattgatggactattttagcctcacatgtagccaatgtctagatctgtctctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgata 120  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36754624 acattgatggactatcttagcctcacatgtatccaatgtctagatctatccctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgata 36754525  T
Q  121 tacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg 191  Q
    ||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||| |||||    
T  36754524 tacctaatacactaagattttggatgatgatctgctgtcaatagtatgattaaccttaacataatgtgatg 36754454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 43216975 - 43216917
Alignment:
Q  96 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtg 154  Q
    ||||||||||||||||||||| |||||| |||| |  ||||||||||| ||||||||||    
T  43216975 aaacatataagtgagatgatcaatatacataatgctttaagattttgggtgatgatgtg 43216917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 50239963 - 50240135
Alignment:
Q  16 cagagacattgatggactattttagcctcacatgtagccaatgtctagatctgtctctggatgcaaaagtaaatgttaa---gaaacatataagtgagat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||   ||||||||||||||||||    
T  50239963 cagagacattgatggactattttagcctcacatgtagccaatgtctagatctgtccctcgatgcaaaagtaaatgttaattagaaacatataagtgagat 50240062  T
Q  113 gatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataat 185  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  50240063 gatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataat 50240135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 14249290 - 14249223
Alignment:
Q  96 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaatt 163  Q
    ||||||||||||||||||| | |||||| ||||||  |||| |||||| |||||||||| | ||||||    
T  14249290 aaacatataagtgagatgaccaatatacataatactttaaggttttgggtgatgatgtggtatcaatt 14249223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 6437626 - 6437692
Alignment:
Q  96 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 162  Q
    ||||||||||||||||||||| |||||| |||| |  |||| |||||  |||||||||| |||||||    
T  6437626 aaacatataagtgagatgatcaatatacataatgctttaaggttttgagtgatgatgtggtgtcaat 6437692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 31967423 - 31967255
Alignment:
Q  23 attgatggactattttagcctcacatgtagccaatgtctagatctgtctctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatata 122  Q
    |||||||||||| |||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31967423 attgatggactactttagcctcacatgtatccaatgtctagatttgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatata 31967324  T
Q  123 cctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg 191  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  31967323 cctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtgatg 31967255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 114
Target Start/End: Complemental strand, 36727670 - 36727631
Alignment:
Q  75 gatgcaaaagtaaatgttaagaaacatataagtgagatga 114  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  36727670 gatgcaaaagtagatgttaagaaacatatatgtgagatga 36727631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 36720129 - 36720169
Alignment:
Q  88 atgttaagaaacatataagtgagatgatcgatatacctaat 128  Q
    ||||| || |||||||||||||||||||| |||||||||||    
T  36720129 atgttgagcaacatataagtgagatgatccatatacctaat 36720169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 45054109 - 45054025
Alignment:
Q  78 gcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 162  Q
    |||||||||||| || || ||||||||||||||||  || |||||||| ||    |||||||||| |||| |||||| |||||||    
T  45054109 gcaaaagtaaatattgagcaacatataagtgagatattcaatatacctgatgtcttaagattttgaatgaagatgtggtgtcaat 45054025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 45919807 - 45919624
Alignment:
Q  21 acattgatggactattttagcctcacatgtagccaatgtctagatctgtctctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgata 120  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45919807 acattggtggactattttagtctcacatgtatccaatgtctagatccgtccctggatgcaaaagtaaatgttaagaaatatataagtgagatgatcgata 45919708  T
Q  121 tacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccatctcattg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||    
T  45919707 tacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgatccaactcattg 45919624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 49880278 - 49880463
Alignment:
Q  21 acattgatggactattttagcctcacatgtagccaatgtctagatctgtctctggatgcaaaagtaaatgttaagaaacatataagtgagatgat--cga 118  Q
    |||||| ||||||||||||| ||| |||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||   ||    
T  49880278 acattggtggactattttagtctcgcatgtatccaatgtctagatccgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgataaaga 49880377  T
Q  119 tatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccatctcattg 203  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||    
T  49880378 tatacctaatacactaagattttgattgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgatccaactcattg 49880463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 16853665 - 16853745
Alignment:
Q  82 aagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 162  Q
    |||||||| || | ||||||||||||||||||||| |||||| |||| |  |||| |||||| |||||||||| |||||||    
T  16853665 aagtaaatcttgaaaaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatgtggtgtcaat 16853745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 31088829 - 31088746
Alignment:
Q  73 tggatgcaaaagtaaatgttaagaaacatata--agtgagatgatcgatatacctaatacactaagattttggatgatgatgtg 154  Q
    ||||||||| ||||  |||| |||||||||||  |||||||||||| ||||||||||| |  ||| ||||||||||||| ||||    
T  31088829 tggatgcaagagtaggtgttgagaaacatatataagtgagatgatcaatatacctaatgccttaatattttggatgatggtgtg 31088746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 35140 - 35303
Alignment:
Q  21 acattgatggactattttagcctcacatgtagccaatgtctagatctgtctctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgata 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35140 acattgatggactattttagcctcacatgtatccaatgtctagatttgtccctggatgcaaaagtaaatgttaagaaacatataagttagatgatcgata 35239  T
Q  121 tacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataa 184  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  35240 tacctaatacactaagattttggatgatgttgtgctgtcaattgtatgattaaccttaacataa 35303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 9023467 - 9023631
Alignment:
Q  21 acattgatggactattttagcctcacatgtagccaatgtctagatctgtctctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgata 120  Q
    |||||||| |||||| ||||||||||||||| |||||||||| || |||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9023467 acattgatagactatcttagcctcacatgtatccaatgtctatatttgtccctggatgcaaaagtaaatgttaagaaacatacaagtgagatgatcgata 9023566  T
Q  121 tacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataat 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9023567 tacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataat 9023631  T

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Target: scaffold0211 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 20041 - 19858
Alignment:
Q  21 acattgatggactattttagcctcacatgtagccaatgtctagatctgtctctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgata 120  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20041 acattgatggactatcttaacctcacatgtatccaatgtctagatttgtccctgaatgcaaaagtaaatgttaagaaacatataagtgagatgatcgata 19942  T
Q  121 tacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccatctcattg 203  Q
    |||||||||||||||||||||||||||||||||| || ||||||||| ||||||| ||||||||| ||||| |||| |||||||    
T  19941 tacctaatacactaagattttggatgatgatgtgctgccaattgtattattaaccataacataatgtgatgatccaactcattg 19858  T

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Target: scaffold0191 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 11645 - 11711
Alignment:
Q  96 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 162  Q
    ||||||||||||||||||||| |||||| ||||||  |||| |||||| |||||||||| |||||||    
T  11645 aaacatataagtgagatgatcaatatacataatactttaaggttttgggtgatgatgtggtgtcaat 11711  T

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Target: scaffold0216 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 29209 - 29157
Alignment:
Q  73 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacct 125  Q
    |||||||||||||| |||||||  |||||||||||||||||||| ||||||||    
T  29209 tggatgcaaaagtagatgttaaacaacatataagtgagatgatcaatatacct 29157  T

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Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 162
Target Start/End: Original strand, 32751 - 32837
Alignment:
Q  75 gatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 162  Q
    ||||||| || | |||||||||||||||||||||||||||  ||||||||| || |  ||| ||||| |||||||||||| |||||||    
T  32751 gatgcaagagcatatgttaagaaacatataagtgagatgactgatatacctgatgcgttaaaatttt-gatgatgatgtggtgtcaat 32837  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 6525069 - 6525116
Alignment:
Q  21 acattgatggactattttagcctcacatgtagccaatgtctagatctg 68  Q
    |||||||||||||||||||| | |||||||| | ||||||||||||||    
T  6525069 acattgatggactattttagtcccacatgtatcaaatgtctagatctg 6525116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 18090021 - 18089942
Alignment:
Q  83 agtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 162  Q
    |||| ||||| |||||||||||| |||||||| | ||||||||||| |  |||| |||||| ||| |||||| |||||||    
T  18090021 agtagatgttcagaaacatataattgagatgaacaatatacctaatgccttaaggttttgggtgaagatgtggtgtcaat 18089942  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 26595978 - 26595897
Alignment:
Q  81 aaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 162  Q
    |||||| ||||| |||||||||||||| |||||| | ||  |||||||    |||| ||||||||||||||||| |||||||    
T  26595978 aaagtagatgtttagaaacatataagtaagatgaccaatgcacctaatgtcttaaggttttggatgatgatgtgatgtcaat 26595897  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 31737254 - 31737166
Alignment:
Q  73 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaa 161  Q
    ||||||||| |||| ||||| |  |||||| |||||| |||||  |||||||||||||| |||||||| |  ||| |||||| ||||||    
T  31737254 tggatgcaagagtagatgttgaacaacatacaagtgatatgattcatatacctaatacattaagatttagtgtgaagatgtggtgtcaa 31737166  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 2929478 - 2929532
Alignment:
Q  75 gatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaata 129  Q
    |||| ||||||| ||||||||||||||||| ||||||||| | | ||||||||||    
T  2929478 gatgtaaaagtagatgttaagaaacatatatgtgagatgaccaagatacctaata 2929532  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 6190585 - 6190651
Alignment:
Q  96 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 162  Q
    ||||||||||||| ||| ||| |||||| |||| |  ||||||||||| |||||||||| |||||||    
T  6190585 aaacatataagtgggattatcaatatacataatgctttaagattttgggtgatgatgtggtgtcaat 6190651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 161
Target Start/End: Original strand, 29912628 - 29912716
Alignment:
Q  73 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaa 161  Q
    |||||| || |||| ||||| || ||||||||||||  |||||| |||||||||||    |||||||| || ||| |||||||||||||    
T  29912628 tggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacctaatttcataagatttggggtgaagatgtgttgtcaa 29912716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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