View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12561_low_2 (Length: 841)
Name: NF12561_low_2
Description: NF12561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12561_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 675; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 17 - 826
Target Start/End: Original strand, 26775481 - 26776288
Alignment:
| Q |
17 |
atacaaaccttttcccttttagtcttttggttgcgcaatatcttaactgctaaaccctccaaagattgcgcaatatcagttttatatattaaatgaattt |
116 |
Q |
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| T |
26775481 |
atacaaaccttttcccttttagtctcttggttgcgcaatatcttaactgctaaaccctccaaagattgcgcaatatcagttttatatattaaatgaattt |
26775580 |
T |
|
| Q |
117 |
gacatgtcatcaatccgtgtgatcaa-ctctgctatgccatgtcatcaatccgcaaaataaaaagtaccacaaacaataggggaattannnnnnngacag |
215 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26775581 |
gacatctcatcaatccgtgtgatcaaactctgctatgccatgtcatcaatccgcaaaataaaaagtaccacaaacaataggggaattatttttttgacag |
26775680 |
T |
|
| Q |
216 |
gagctaacaataagtaactaacaacggtaatagtctatagtctatttatataataatgaatgaaagctttattcaactcagctgtgtgaaacaagcaaca |
315 |
Q |
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| T |
26775681 |
gagctaacaataagtaactaataacggtaatagtctat-------ttatataataatgaatgaaagctttattcaactcaactgtgtgaaacaagcaaca |
26775773 |
T |
|
| Q |
316 |
ttcacaactttaatttgaactagctttgtttttcctttatccaacgttgttaatttgtagggttc----aatcaataatacagtgtatacctttgaagca |
411 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
26775774 |
ttcacaactttaatttgaactaggtttgtttttcctttatccaacgttgttaatttgtagggttcgttcaatcaataatacagtgtatacctttgaagta |
26775873 |
T |
|
| Q |
412 |
aacgtaatgattcaacgttgattaaattaacctaggtttgttttcctttatccaactctgattctagttcttttatttcttatgaataggtaataaattc |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
26775874 |
aacgtaatgattcaacgttgattaaattaacctaggtttgttttcctttatccaactctgattctaattcttttatttcttatcaataggtaataaattc |
26775973 |
T |
|
| Q |
512 |
acaagaatttatttcttttcaagtctgaatcaaaataatggatgaagtgattagtgagtggagcagcgagcagaataaattgtttgaatatgcattggcc |
611 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26775974 |
acaagaatttaattcttttcaagtctgaatcaaaataatggatgaagtgagtagtgagtggagcagcgagcagaataaattgtttgaatatgcattggcc |
26776073 |
T |
|
| Q |
612 |
aattagcctgacgatgttgtggatcgatgggagaagattgcggccggtgtgcctgggaaatctttggaacaaattaaacatcactatgaggttttgatag |
711 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
26776074 |
aattatcctgacgatgttgtggatcgatgggagaagattgcggccggtgtgcctgggaaaactttggaacaaattaaacatcactatgaggttttggtag |
26776173 |
T |
|
| Q |
712 |
atgatatccacaacattgaatctggttttgtgcctccaccagattatgattctttttcaaactcaacaaagtgtactattgtcaaaaagggaattaaggc |
811 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
26776174 |
atgatattcacaacattgaatctggttttgtgcctctaccagattatgattctttttcaaactcaacaaagtgtactattgttaaaaagggaactaaggc |
26776273 |
T |
|
| Q |
812 |
ttccggttcttatca |
826 |
Q |
| |
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||||||||||||||| |
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| T |
26776274 |
ttccggttcttatca |
26776288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 594 - 772
Target Start/End: Complemental strand, 26556619 - 26556441
Alignment:
| Q |
594 |
tttgaatatgcattggccaattagcctgacgatgttgtggatcgatgggagaagattgcggccggtgtgcctgggaaatctttggaacaaattaaacatc |
693 |
Q |
| |
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|||||| || ||||||| ||||| || || || | |||||||||||||||||| |||||||| | |||||| |||||| |||| ||| | ||||||| || |
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| T |
26556619 |
tttgaaaatacattggcgaattatcccgaggacgctgtggatcgatgggagaaaattgcggctgatgtgcccgggaaaactttagaagagattaaacgtc |
26556520 |
T |
|
| Q |
694 |
actatgaggttttgatagatgatatccacaacattgaatctggttttgtgcctccaccagattatgattctttttcaaa |
772 |
Q |
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|||||| ||||||| | ||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26556519 |
actatgtggttttgtttgatgatatcaaccacattgaatctggttttgtgcctctgccagattatgattctttttcaaa |
26556441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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