View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12561_low_4 (Length: 570)
Name: NF12561_low_4
Description: NF12561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12561_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 216 - 550
Target Start/End: Complemental strand, 16204242 - 16203907
Alignment:
| Q |
216 |
tgttagtttggaaatgcttacaattttaacttttaactagatccaattttggtatattttc-taatattttgttattcactaattattgataacaggtgc |
314 |
Q |
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| T |
16204242 |
tgttagtttggaaacgcttacaattttatcttttaagtagatcctattttcgtgcattttcctaatattttgttattgactaataattgctaacaggtgc |
16204143 |
T |
|
| Q |
315 |
tgcagaaatggacataaccccaattcaaaaatctattgacagaatgacagttcacaatgaaccaataccaacccaccaaccacattctcttccaactata |
414 |
Q |
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| T |
16204142 |
tgcagaaatggacataaccccaattgcaaaatcaatcgacagaatgacggttcacaatgaaccaataccaagccaccaaccacatactcttccaactatt |
16204043 |
T |
|
| Q |
415 |
gctgaaacacaaaacccttctttaggaatccacaaccaattttctccgaagctctctacagaaaccaaaacaccctatccatcatctactataacacatg |
514 |
Q |
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| T |
16204042 |
gctgaaacacaaaccccttctctaggaatccataaccaattttctccagagctctctacagcaaccaaaacaccttatccatcatctactataacacatg |
16203943 |
T |
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| Q |
515 |
accaaaatttaccacacctatccagtgaaatcaaaa |
550 |
Q |
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| T |
16203942 |
accaaaatttaccacacctatccagtgaaatcaaaa |
16203907 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 29229741 - 29229781
Alignment:
| Q |
139 |
tatataggccagatacattagttattcagtgaaactaaaaa |
179 |
Q |
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| T |
29229741 |
tatataggtcagatacattagttattcaatgaacctaaaaa |
29229781 |
T |
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