View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12561_low_5 (Length: 549)
Name: NF12561_low_5
Description: NF12561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12561_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 34895693 - 34895989
Alignment:
| Q |
1 |
agaatgaaaaggacagggcatagtattattttgggtttatttgcatttgaatgtttgtatagtgaagatcaagatgttacttgtttgttttggttgcaat |
100 |
Q |
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| T |
34895693 |
agaatgaaaaggacagggcatagtattattttgggtttatttgcatttgaatgtttgtatagtggagat------gttgcttgtttgttttggttgcaat |
34895786 |
T |
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| Q |
101 |
tatgnnnnnnnacatgagttgcatttgcatattttggactgtccaatctaaatcgtacggtttgtaatttaatgttatataccgactcaaatcacgtcgt |
200 |
Q |
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| T |
34895787 |
tatgtttttttacatgagttgcatttgcatattttggaccgttcaatctaaatcgtatggtttgtaatttaatgttatatact-actcaaatcacgtcgt |
34895885 |
T |
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| Q |
201 |
taaaaatgtgagctatttgattttgatcaaaccacttataattttcaacaaatgatattgttttaaattggctttgggttttggtatgagtttttgttgc |
300 |
Q |
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| T |
34895886 |
taaaaatgtgagctatttgattttgatcaaacgacttataattttcaacaaatgatattgttttaaattggctttgggttttggtatgagtttttgttgc |
34895985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 366 - 492
Target Start/End: Original strand, 34896051 - 34896177
Alignment:
| Q |
366 |
tacctcctttgaggttaatatatgggtacattaaagtgtagaaaacattgatatgtaggagtactcnnnnnnnnnnnnnttgatgtgtaggagtgaacaa |
465 |
Q |
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| T |
34896051 |
tacctcctttgaggttaatatatgggtacattaaagtgtagaaaacattgatatgtaggagtactcaaaaaagaaaaaattgatgtgtaggagtgaacaa |
34896150 |
T |
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| Q |
466 |
tgatttggaacatgatggttgatttta |
492 |
Q |
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| T |
34896151 |
tgatttggaacatgatggttgatttta |
34896177 |
T |
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