View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12561_low_6 (Length: 381)
Name: NF12561_low_6
Description: NF12561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12561_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 104 - 373
Target Start/End: Original strand, 1324601 - 1324865
Alignment:
| Q |
104 |
tgaggcttctcactttctacctacatgtcattgctgggacgttggtgtgtattgagtacccatcaatagtggagaaaaaattggtgaaagatgatatcct |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1324601 |
tgaggcttctcactttctacctacatgtcattgctgggacgttggtgtgtgttgagtacccatcaatagtggagaaagaattggtgaaagatgatatcct |
1324700 |
T |
|
| Q |
204 |
aggatttttccatctatttttctacggcatagaaggtctctattgctacttcgtcacctccacaacactttctttgccttgcctagttgtgggagtcttg |
303 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1324701 |
aggatttgtccatctatttttctacggcatagaaggtctctattgctacttcgtcacctccacaacactttct-----ttgcctagttgtgggagtcttg |
1324795 |
T |
|
| Q |
304 |
agtttatcttggttatgatattcaatggtgtggcttctcaacattacattagctttgttaacagtgaacg |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1324796 |
agtttatcttggttatgatattcaatggtgtagcttctcaacattacattatctttgttaacagtgaacg |
1324865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 104 - 373
Target Start/End: Original strand, 1328447 - 1328711
Alignment:
| Q |
104 |
tgaggcttctcactttctacctacatgtcattgctgggacgttggtgtgtattgagtacccatcaatagtggagaaaaaattggtgaaagatgatatcct |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1328447 |
tgaggcttctcactttctacctacatgtcattgctgggacgttggtgtgtgttgagtacccatcaatagtggagaaagaattggtgaaagatgatatcct |
1328546 |
T |
|
| Q |
204 |
aggatttttccatctatttttctacggcatagaaggtctctattgctacttcgtcacctccacaacactttctttgccttgcctagttgtgggagtcttg |
303 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1328547 |
aggatttgtccatctatttttctacggcatagaaggtctctattgctacttcatcacctccacaacactttct-----ttgcctagttgtgggagtcttg |
1328641 |
T |
|
| Q |
304 |
agtttatcttggttatgatattcaatggtgtggcttctcaacattacattagctttgttaacagtgaacg |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1328642 |
agtttatcttggttatgatattcaatggtgtagcttctcaacattacattatctttgttaacagtgaacg |
1328711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 87 - 373
Target Start/End: Original strand, 1329206 - 1329475
Alignment:
| Q |
87 |
ggagaagattagagaagtgaggcttctcactttctacctacatgtcattgctgggacgttggtgtgtattgagtacccatcaatagtggagaaaaaattg |
186 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
1329206 |
ggagaagatgaaagaagtgaggcttctcactttctacctacatgtcattgttgggacgttggtgtgtgttgagtacccatcaatagtggagaaagaa--- |
1329302 |
T |
|
| Q |
187 |
gtgaaagatgatatcctaggatttttccatctatttttctacggcatagaaggtctctattgctacttcgtcacctccacaacactttctttgccttgcc |
286 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1329303 |
---------gatatcctaggatttgtccatctatttttctagagcatagaaggtctctattgctactttgtcacctccacaacactttctttgcct---- |
1329389 |
T |
|
| Q |
287 |
tagttgtgggagtcttgagtttatcttggttatgatattcaatggtgtggcttctcaacattacattagctttgttaacagtgaacg |
373 |
Q |
| |
|
| ||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
1329390 |
-aattgtgggagtcttgaatttatcttaattatgatattcaatggtgtagcttctcaacattacattaactttgttaaccgtgaacg |
1329475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 87 - 266
Target Start/End: Original strand, 1323183 - 1323362
Alignment:
| Q |
87 |
ggagaagattagagaagtgaggcttctcactttctacctacatgtcattgctgggacgttggtgtgtattgagtacccatcaatagtggagaaaaaattg |
186 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
1323183 |
ggagaagataaaagaagtgaggcttctcactttctacctacatgtcattgctggaacgttggtgtgtgttgagtacccatcaatagtggagaaagaattg |
1323282 |
T |
|
| Q |
187 |
gtgaaagatgatatcctaggatttttccatctatttttctacggcatagaaggtctctattgctacttcgtcacctccac |
266 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1323283 |
gtgaaagatgatatcctaggatttgtccatctatttttctacggcatagaaggtctctattgctacttcgtcacctccac |
1323362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 87 - 354
Target Start/End: Complemental strand, 1753497 - 1753235
Alignment:
| Q |
87 |
ggagaagattagagaagtgaggcttctcactttctacctacatgtcattgctgggacgttggtgtgtattgagtacccatcaatagtggagaaaaaattg |
186 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||| ||||| |||||||| || ||||| ||| ||||||| || |||| |||||||||| |||| |
|
|
| T |
1753497 |
ggagaagatgaaagaagtgaggcttctcactttctacctgcatgttattgctggaaccttggtttgtgttgagtatccctcaaaagtggagaaagcattg |
1753398 |
T |
|
| Q |
187 |
gtgaaagatgatatcctaggatttttccatctatttttctacggcatagaaggtctctattgctacttcgtcacctccacaacactttctttgccttgcc |
286 |
Q |
| |
|
|| ||||| |||| || |||||| | ||| ||||||| || | ||||||||| | ||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
1753397 |
gtagaagatcatattcttggatttgttcatgtatttttttatgccatagaaggattatattgttactttatcacctccacagcactttctttgcca---- |
1753302 |
T |
|
| Q |
287 |
tagttgtgggagtcttgagtttatcttggttatgatattcaatggtgtggcttctcaacattacatta |
354 |
Q |
| |
|
|||||||| ||||||| | |||||| ||||||| ||||| || || | |||||||||||||||| |
|
|
| T |
1753301 |
-agttgtggttgtcttgaatacatcttgattatgatcttcaacggggtttcgtctcaacattacatta |
1753235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University