View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12562_high_1 (Length: 356)
Name: NF12562_high_1
Description: NF12562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12562_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 40 - 344
Target Start/End: Complemental strand, 12614697 - 12614390
Alignment:
| Q |
40 |
aaccgcatgctcccaatggttaatgtgaatagattnnnnnnnntataa---gaatatcatgactaactaatcggtaaagagttgactcatattcggtaaa |
136 |
Q |
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| T |
12614697 |
aaccgcatgctcccaatggttaatgtgaatagattaaaaataaaaaaaaaggaatattaggactatctaatcggtaaagagttgactcatacttagtaaa |
12614598 |
T |
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| Q |
137 |
aacgtaaattcaatttctattacaaatataatgactttgttaggtcagtactcagtactatgtaggtacatttatcgatgcattctggactatgagatat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||| |
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| T |
12614597 |
aacgtaaattcaatttctattacaaatataatgactttgttaggtcagtactcagtactatgtaagtacatttgtcggtgcattctggactgtgagatat |
12614498 |
T |
|
| Q |
237 |
gctttaacttcgatgaactttcaatacttaattcatttaaacttttaaattattnnnnnnnntgaaacactactcatgttattatttttctttagggtaa |
336 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12614497 |
gctttaacttcgatgagctttcaattcttaattcatttaaacttttaaattattaaaaaaaatgaaacactactcatgttattatttttctttagggtaa |
12614398 |
T |
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| Q |
337 |
attatgat |
344 |
Q |
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|||||||| |
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| T |
12614397 |
attatgat |
12614390 |
T |
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