View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12562_high_3 (Length: 313)
Name: NF12562_high_3
Description: NF12562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12562_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 8643206 - 8643500
Alignment:
| Q |
1 |
agatataggtgattaggaacttaaatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagtcaatatagtaaaacc |
100 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8643206 |
agatatcggtgattaggaactaaaatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagtcaatatagtaaaacc |
8643305 |
T |
|
| Q |
101 |
atagatgataactactgaacatcttaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttctaaatatgataattg |
200 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8643306 |
atagatgataattactgaacatctgaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagatatgcattttttttctaaatatgataattg |
8643405 |
T |
|
| Q |
201 |
tgatttagcataacccttccttttgtatgaaaaatccttctttttagttatactc-ttcgtcaaaagcctctcacagaaggaggagggtacttgt |
294 |
Q |
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| T |
8643406 |
tgatttagcataacccttccttttgtatgaaaaatccttctttttagttgtactctttcatcaaaagcctctcacagaaggaggagggtacttgt |
8643500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 24 - 258
Target Start/End: Original strand, 8635802 - 8636040
Alignment:
| Q |
24 |
aatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagtcaatatagtaaaaccatagatgataactactgaacatc |
123 |
Q |
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| T |
8635802 |
aatgaaatagttgagcaacaatcattgtctttttctaaaccattgccaacaagataacaagtcaatctagtaaaaccatagatgataactactgaacatc |
8635901 |
T |
|
| Q |
124 |
ttaattaaagtttac-aaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttct---aaatatgataattgtgatttagcataacccttc |
219 |
Q |
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| T |
8635902 |
ttaattaaagtttacaaaaaaagacatcatttgcatcctaaaatgagatatgcattttttttctttcaaatatcataattgtgatttagcataaaccttc |
8636001 |
T |
|
| Q |
220 |
cttttgtatgaaaaatccttctttttagttatactcttc |
258 |
Q |
| |
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| T |
8636002 |
ctgctgtatgaaaattccttgtttttagttgtactcttc |
8636040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 8677197 - 8677344
Alignment:
| Q |
24 |
aatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagtcaatatagtaaaaccatagatgataactactgaacatc |
123 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |||| || |||||||||||||||||||||| | | |||||||||||||||||||||||| || |
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| T |
8677197 |
aatgaaatagttgagcaataatcattgtctttttccaaacaat-gccaacaagataacaagtcaatccaatgcaaccatagatgataactactgaacgtc |
8677295 |
T |
|
| Q |
124 |
ttaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagata |
172 |
Q |
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| T |
8677296 |
ttaattaaagtttacaaaaaagacatcatttgcatccgaaaatgagata |
8677344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 8545409 - 8545351
Alignment:
| Q |
127 |
attaaagtttacaaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttc |
185 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| |
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| T |
8545409 |
attaaagtttacaaaaaagacatcatttgcatcctaaaatgagatttgtattttttttc |
8545351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 8640227 - 8640317
Alignment:
| Q |
117 |
gaacatcttaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttctaaatatgataattgtgatttagcat |
211 |
Q |
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| T |
8640227 |
gaacatctgaattaaagcttacaaaaa-gacattgtttgcatcctaaaatgagatatgcat---tttttgaaatatcataattctgatttagcat |
8640317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 8549230 - 8549193
Alignment:
| Q |
137 |
acaaaaaagacatcatttgcatcctaaaatgagatatg |
174 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| |
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| T |
8549230 |
acaaaaaagacatcatttgcatcctaaaaagagatatg |
8549193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 8527663 - 8527719
Alignment:
| Q |
116 |
tgaacatcttaattaaagtttacaaaa-aagacatcatttgcatcctaaaatgagat |
171 |
Q |
| |
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||||||||| |||||| ||||||||| ||||||||||||||||| ||||||||||| |
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| T |
8527663 |
tgaacatctagattaaattttacaaaaaaagacatcatttgcatcttaaaatgagat |
8527719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 9075576 - 9075532
Alignment:
| Q |
127 |
attaaagtttacaaaaaagacatcatttgcatcctaaaatgagat |
171 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||| ||||| |
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| T |
9075576 |
attaaagttaacaaaaaagccatcatttgcatcctaaaacgagat |
9075532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 1601392 - 1601347
Alignment:
| Q |
116 |
tgaacatcttaattaaagtttacaaaaaagacatcatttgcatccta |
162 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
1601392 |
tgaacatctagattaaagtttacaaaaa-gacatcatttgcatccta |
1601347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 44438811 - 44438654
Alignment:
| Q |
41 |
ataatcattgtctttttctaaaccattgccaacaagataac-aagtcaatatagtaaaaccatagatgataactactgaacatcttaattaaa-gtttac |
138 |
Q |
| |
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|||||||||| |||||||||||||| | ||| ||||||||| ||| || | | |||||||||| ||| || || ||||||| || |||||| ||||| |
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| T |
44438811 |
ataatcattgactttttctaaaccaat-ccatcaagataaccaagccagtctcgtaaaaccatggataatgaccgatgaacattttgattaaaagtttag |
44438713 |
T |
|
| Q |
139 |
aaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttctaaatatgataa |
197 |
Q |
| |
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|||||||||||||||||| |||||||||||||| || |||| |||| ||||||| |||| |
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|
| T |
44438712 |
aaaaaagacatcatttgcctcctaaaatgagatgtgtattttttttttaaatatcataa |
44438654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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