View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12562_low_1 (Length: 398)
Name: NF12562_low_1
Description: NF12562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12562_low_1 |
 | |
|
| [»] scaffold0067 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 381
Target Start/End: Complemental strand, 26050376 - 26050011
Alignment:
| Q |
16 |
gacatcagtaagaacggaagcaacaccgtggacatctaacagagtgaagacacgttcattccaacgacgaaaattttgtcctttaaacacttcaattctg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
26050376 |
gacatcagtaagaacggaagcaacaccgtggacatctaacagagtgaagacacgttcattccaacgacggaaattctgtcctttaaacacttcaattctg |
26050277 |
T |
|
| Q |
116 |
gaaacgtctgggaactgttttgcataggtgacaactgccggcggattggtagcaacagcaagagtagagtctgtaacattcttgtttttgtcattgtcag |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26050276 |
gaaacgtctgggaactgttttgcataggtgacaactgccggcggattggtagcaacagcaagagtagagtctgtaacattcttgtttttgtcattgtcaa |
26050177 |
T |
|
| Q |
216 |
aattttctccagcgataattccttagattgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtg |
315 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26050176 |
aattttctccagccataattccttagattgttgaaagcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtg |
26050077 |
T |
|
| Q |
316 |
actaagtcactggactaaggaattatccgcagaattgcgcaactccgccagaatacaacaggtctt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26050076 |
actaagtcactggactaaggaattatccgcagaattgcgcaactcccccagaatacaacaggtctt |
26050011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 26053563 - 26053425
Alignment:
| Q |
243 |
ttgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatc |
342 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26053563 |
ttgttgaaagcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatc |
26053464 |
T |
|
| Q |
343 |
cgcagaattgcgcaactccgccagaatacaacaggtctt |
381 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26053463 |
cgtagaattgcgcaactcccccagaatacaacaggtctt |
26053425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 252 - 378
Target Start/End: Complemental strand, 40254989 - 40254868
Alignment:
| Q |
252 |
gcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatccgcagaatt |
351 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| | |||| ||||| | |||||| ||||||||||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
40254989 |
gcggatgactgaaggatcacaacctgtaaaataataaaataaaacg-taaaac----aggcgtgactatgtcactgaactaaggaattatccacagaatt |
40254895 |
T |
|
| Q |
352 |
gcgcaactccgccagaatacaacaggt |
378 |
Q |
| |
|
|||||||||| ||| | |||||||||| |
|
|
| T |
40254894 |
gcgcaactcctccatagtacaacaggt |
40254868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 381
Target Start/End: Complemental strand, 27075343 - 27074978
Alignment:
| Q |
16 |
gacatcagtaagaacggaagcaacaccgtggacatctaacagagtgaagacacgttcattccaacgacgaaaattttgtcctttaaacacttcaattctg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
27075343 |
gacatcagtaagaacggaagcaacaccgtggacatctaacagagtgaagacacgttcattccaacgacggaaattctgtcctttaaacacttcaattctg |
27075244 |
T |
|
| Q |
116 |
gaaacgtctgggaactgttttgcataggtgacaactgccggcggattggtagcaacagcaagagtagagtctgtaacattcttgtttttgtcattgtcag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27075243 |
gaaacgtctgggaactgttttgcataggtgacaactgctggcggattggtagcaacagaaaaagtagagtctgtaacattcttgtttttgtcattgtcag |
27075144 |
T |
|
| Q |
216 |
aattttctccagcgataattccttagattgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtg |
315 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27075143 |
aattttctccagccataattccttagattgttgaatgcggatgactgaagtatcacaacctgcaaaacaataaactaaaaaggtaaaaccctgaggcgtg |
27075044 |
T |
|
| Q |
316 |
actaagtcactggactaaggaattatccgcagaattgcgcaactccgccagaatacaacaggtctt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27075043 |
actaagtcactggactaaggaattatccgcagaattgcgcaactcccccagaatacaacaggtctt |
27074978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 244 - 376
Target Start/End: Complemental strand, 27078478 - 27078346
Alignment:
| Q |
244 |
tgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatcc |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27078478 |
tgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatcc |
27078379 |
T |
|
| Q |
344 |
gcagaattgcgcaactccgccagaatacaacag |
376 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
27078378 |
gcagaattgcgcaactcccccagaatacaacag |
27078346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 377
Target Start/End: Complemental strand, 8363477 - 8363309
Alignment:
| Q |
207 |
cattgtcagaattttctccagcgataattccttagattgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccc |
306 |
Q |
| |
|
|||||||| ||| |||||||| |||||||||||||||||| |||||||| | |||||| |||||||||||||||||| ||| | ||| ||||||||| |
|
|
| T |
8363477 |
cattgtcataatcttctccagtcataattccttagattgttaaatgcggaaggctgaaggatcacaacctgcaaaacaagaaaatgaaa-ggtaaaacc- |
8363380 |
T |
|
| Q |
307 |
tgaggcgtgactaagtcactggactaaggaattatccgcagaattgcgcaactccgccagaatacaacagg |
377 |
Q |
| |
|
||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
8363379 |
tgatgcgtgactatgtcactgaactaaggaattatccgcagaattgcgcaactcctccagagtacaacagg |
8363309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 14636195 - 14636413
Alignment:
| Q |
30 |
cggaagcaacaccgtggacatctaacagagtgaagacacgttcattccaacgacgaaaattttgtcctttaaacacttcaattctggaaacgtctgggaa |
129 |
Q |
| |
|
||||||| ||||||||||| |||| ||| ||||||| ||||||| |||||||||||||| ||||| | ||| |||||||||| ||||||||| |||| |
|
|
| T |
14636195 |
cggaagcgacaccgtggacgtctagcagtgtgaagatgcgttcatgtcaacgacgaaaattatgtccatcaaaaacttcaattcatgaaacgtctaggaa |
14636294 |
T |
|
| Q |
130 |
ctgttttgcataggtgacaactgccggcggattggtagcaacagcaagagtagagtctgtaacattcttgtttttgtcattgtcagaattttctccagcg |
229 |
Q |
| |
|
|||||||||||||| ||| |||| ||| |||| | ||||||| |||||||| | | ||| |||||||||| ||| |||||| ||||| |||||||| |
|
|
| T |
14636295 |
ctgttttgcataggcgaccactgtcggaggatagctagcaactacaagagtaaaatatgtgtcattcttgttattgccattgttagaatcctctccagcc |
14636394 |
T |
|
| Q |
230 |
ataattccttagattgttg |
248 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14636395 |
ataattccttagattgttg |
14636413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 27529164 - 27529093
Alignment:
| Q |
307 |
tgaggcgtgactaagtcactggactaaggaattatccgcagaattgcgcaactccgccagaatacaacaggt |
378 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||| |||||| |||||| ||| ||||||| |||| |
|
|
| T |
27529164 |
tgaggcgtgactacgtcactagactaaggaattatccgcataattgcacaactcacccataatacaataggt |
27529093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 33358052 - 33358003
Alignment:
| Q |
329 |
actaaggaattatccgcagaattgcgcaactccgccagaatacaacaggt |
378 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
33358052 |
actaaggaattatccgtagaattgcgcaactcctccagagtacaacaggt |
33358003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 334
Target Start/End: Complemental strand, 8365677 - 8365589
Alignment:
| Q |
244 |
tgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaag |
334 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| |||||| || | |||| ||||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
8365677 |
tgttgaacgcggatgactgaaggatcacaacctgaaaaacaagaacatgaaaa-ataaaa-cctgaggcgtgactatgtcactgaactaag |
8365589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 230 - 378
Target Start/End: Original strand, 41455350 - 41455496
Alignment:
| Q |
230 |
ataattccttagattgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactgga |
329 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||| ||| ||||||| ||||| | ||||||||||||| ||||||| | |
|
|
| T |
41455350 |
ataattccttagattgttgactgcggatgactgaaggatcataacctacaaaacaagaaaataaaaag-taaaatc-tgaggcgtgactatgtcactgaa |
41455447 |
T |
|
| Q |
330 |
ctaaggaattatccgcagaattgcgcaactccgccagaatacaacaggt |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| | |||||||||| |
|
|
| T |
41455448 |
ctaaggaattatccgcagaattgcgcaactcccccaaagtacaacaggt |
41455496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 251 - 378
Target Start/End: Original strand, 41451687 - 41451813
Alignment:
| Q |
251 |
tgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatccgcagaat |
350 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| ||| ||||||| |||||| ||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
41451687 |
tgcggatgactgaaggatcataacctgcaaaacaagaaaataaaaag-taaaaca-tgaggcgtgactatgtcactaaactaaggaattatccgcagaat |
41451784 |
T |
|
| Q |
351 |
tgcgcaact-ccgccagaatacaacaggt |
378 |
Q |
| |
|
|| |||||| || ||||| |||||||||| |
|
|
| T |
41451785 |
tgtgcaactccccccagagtacaacaggt |
41451813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 378
Target Start/End: Complemental strand, 32355378 - 32355246
Alignment:
| Q |
244 |
tgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatcc |
343 |
Q |
| |
|
|||||| ||||||||||||||| |||| ||||||||||||| ||| ||||||| ||||||| ||||||||||| | |||||| |||||| |||||| | |
|
|
| T |
32355378 |
tgttgattgcggatgactgaaggatcataacctgcaaaacaagaaaataaaaag-taaaacc-tgaggcgtgacaatatcactgaactaagaaattattc |
32355281 |
T |
|
| Q |
344 |
gcagaattgcgcaactccgccagaatacaacaggt |
378 |
Q |
| |
|
|||||||| ||||||| | ||||| |||||||||| |
|
|
| T |
32355280 |
gcagaattacgcaacttctccagagtacaacaggt |
32355246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 221 - 378
Target Start/End: Complemental strand, 6799288 - 6799133
Alignment:
| Q |
221 |
tctccagcgataattccttagattgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaa |
320 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||||| | ||| ||||||| ||||||| || |||||||||| |
|
|
| T |
6799288 |
tctccagccataattccttaaattgttgtttgcggatgactgaaggatcacaacctgcaaaataagaaaataaaaag-taaaacc-tgtggcgtgactat |
6799191 |
T |
|
| Q |
321 |
gtcactggactaaggaattatccgcagaattgcgcaactccgccagaatacaacaggt |
378 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||| ||| | ||| |||||| |
|
|
| T |
6799190 |
gtcactgaactaaggaattatccgcagaattgcgcgactcccccaaagtactacaggt |
6799133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 220 - 378
Target Start/End: Original strand, 8996043 - 8996201
Alignment:
| Q |
220 |
ttctccagcgataattccttagattgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgacta |
319 |
Q |
| |
|
|||| |||| ||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| | || ||||| | ||||| | | ||| |||| || |
|
|
| T |
8996043 |
ttcttcagccataattccttagattgttgtatgcggatgactgaaggatcacatcctgcaaaacaatgaaataaaacg-taaaatc-taaggtgtgatta |
8996140 |
T |
|
| Q |
320 |
agt--cactggactaaggaattatccgcagaattgcgcaactccgccagaatacaacaggt |
378 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
8996141 |
cgtgtcactggactaaggaattatccgcagaattgcacaactcccccaaaatacaacaggt |
8996201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 254 - 378
Target Start/End: Original strand, 8986604 - 8986728
Alignment:
| Q |
254 |
ggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagt--cactggactaaggaattatccgcagaatt |
351 |
Q |
| |
|
||||||| |||| |||||| ||||||||||| | || ||||| | ||||| | ||||||||||||| || |||||||||||||||||||||| |||||| |
|
|
| T |
8986604 |
ggatgaccgaaggatcacaccctgcaaaacaatgaaataaaacg-taaaatc-tgaggcgtgactacgtgtcactggactaaggaattatccgtagaatt |
8986701 |
T |
|
| Q |
352 |
gcgcaactccgccagaatacaacaggt |
378 |
Q |
| |
|
|||||||||| |||| |||||| |||| |
|
|
| T |
8986702 |
gcgcaactcccccagcatacaaaaggt |
8986728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 375
Target Start/End: Original strand, 42528315 - 42528436
Alignment:
| Q |
244 |
tgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatcc |
343 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||| | ||| |||||| | ||||||||||||| || |||||||||||| |
|
|
| T |
42528315 |
tgttgaatgcggatgactgaaggatcacaacctgcaaaacaagaaaat-gaaacgtaaaa-cttgaggcgtgactatgt--------taaggaattatct |
42528404 |
T |
|
| Q |
344 |
gcagaattgcgcaactccgccagaatacaaca |
375 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| |
|
|
| T |
42528405 |
gcagaattgcgcaactcccccaaaatacaaca |
42528436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 252 - 378
Target Start/End: Original strand, 38640644 - 38640768
Alignment:
| Q |
252 |
gcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatccgcagaatt |
351 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | |||| ||||| | ||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
38640644 |
gcggatgactgaaggatcacaacctgcaaaataataaaataaaacg-taaaacc-tgaggcgtgactatgtcactgaactaaggaattatccgcagaatt |
38640741 |
T |
|
| Q |
352 |
gcgcaactccgccagaatacaacaggt |
378 |
Q |
| |
|
| |||||||| ||||| |||||||||| |
|
|
| T |
38640742 |
gtgcaactcccccagagtacaacaggt |
38640768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 240 - 374
Target Start/End: Complemental strand, 43659052 - 43658920
Alignment:
| Q |
240 |
agattgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaatt |
339 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||||||||||||| ||| | ||| | ||||| | |||||| |||| | |||||| ||||||||||| |
|
|
| T |
43659052 |
agattgttgtttgcggataactgaaggatcacaacctgcaaaacaagaaaatgaaacg-taaaatc-tgaggcatgacaatgtcactaaactaaggaatt |
43658955 |
T |
|
| Q |
340 |
atccgcagaattgcgcaactccgccagaatacaac |
374 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| |
|
|
| T |
43658954 |
atccgcagaattgcgcaactcccccagagtacaac |
43658920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 343
Target Start/End: Complemental strand, 43654451 - 43654317
Alignment:
| Q |
207 |
cattgtcagaattttctccagcgataattccttagattgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccc |
306 |
Q |
| |
|
|||||||| ||| |||||| | ||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||| | ||| ||||| | |
|
|
| T |
43654451 |
cattgtcataatcgtctccaaccataattccttagattgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaat-gaaacataaaa-ca |
43654354 |
T |
|
| Q |
307 |
tgaggcgtgactaagtcactggactaaggaattatcc |
343 |
Q |
| |
|
||||||||||| | ||||||| ||||||||||||||| |
|
|
| T |
43654353 |
tgaggcgtgacaatgtcactgaactaaggaattatcc |
43654317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 36610395 - 36610197
Alignment:
| Q |
16 |
gacatcagtaagaacggaagcaacaccgtggacatctaacagagtgaagacacgttcattccaacgacgaaaattttgtcctttaaacacttcaattctg |
115 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| |||| ||| ||||||| || ||||||| ||||| ||||| | ||| |||||||||||| |
|
|
| T |
36610395 |
gacatcagtaagagcggaagcgacaccgtggacgtctagcagtgtgaagatgggt-------aacgacggaaattctgtccatcaaaaacttcaattctg |
36610303 |
T |
|
| Q |
116 |
gaaacgtctgggaactgttttgcataggtgacaactgccggcgga---ttggtagcaacagcaagagtagagtctgtaacattcttgtttttgtcattgt |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||| ||| | ||||||||| |||| |||||||||| ||||||||||| |||||||||| |
|
|
| T |
36610302 |
gaaacgtctgggaactgtattgcataggtgaccactgccggaggaggatcagtagcaacaacaagggtagagtctgagacattcttgttattgtcattgt |
36610203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 174 - 373
Target Start/End: Original strand, 36611878 - 36612076
Alignment:
| Q |
174 |
caagagtagagtctgtaacattcttgtttttgtcattgtcagaattttctccagcgataattccttagattgttgaatgcggatgactgaagtatcacaa |
273 |
Q |
| |
|
|||| ||||||| || ||||||||||| |||||||||| ||||| |||||| | |||||||||||||||| ||| || ||||||||||| ||||||| |
|
|
| T |
36611878 |
caagggtagagtttgagacattcttgttattgtcattgttagaatcatctccatccataattccttagattgcggaaggcagatgactgaaggatcacaa |
36611977 |
T |
|
| Q |
274 |
cctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgacta-agtcactggactaaggaattatccgcagaattgcgcaactccgccagaataca |
372 |
Q |
| |
|
||||||||||| |||| | ||| |||||| || ||||||||||| |||||||||||||| |||||| | ||||||||||||||||| ||| |||||| |
|
|
| T |
36611978 |
cctgcaaaacaataaaat-gaaacgtaaaa-tctaaggcgtgactaccgtcactggactaagaaattattcacagaattgcgcaactcccccataataca |
36612075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 243 - 375
Target Start/End: Original strand, 28703664 - 28703794
Alignment:
| Q |
243 |
ttgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatc |
342 |
Q |
| |
|
||||||| ||||||||| ||||| |||| ||||||||||||| ||| ||||||| ||||| |||||| ||| || ||||||| |||||||||||||| |
|
|
| T |
28703664 |
ttgttgactgcggatgagtgaaggatcataacctgcaaaacaagaaaataaaaag-taaaatt-tgaggcatgattatgtcactgaactaaggaattatc |
28703761 |
T |
|
| Q |
343 |
cgcagaattgcgcaactccgccagaatacaaca |
375 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||| |
|
|
| T |
28703762 |
cgcagaattgcgcaactcccccaaagtacaaca |
28703794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 36611672 - 36611877
Alignment:
| Q |
16 |
gacatcagtaagaacggaagcaacaccgtggacatctaacagagtgaagacacgttcattccaacgacgaaaattttgtcctttaaacacttcaattctg |
115 |
Q |
| |
|
|||||||||||| | ||||| |||| ||||| ||| ||| ||||||| | ||||| |||||||| ||| | ||||| | ||| ||||||||||| |
|
|
| T |
36611672 |
gacatcagtaagggcagaagcgacactatggacgcctagcagtgtgaagatgcattcatgccaacgactgaaagtatgtccatcaaaaacttcaattcta |
36611771 |
T |
|
| Q |
116 |
gaaacgtctgggaactgttttgcataggtgacaactgcc---ggcggattggtagcaacagcaagagtagagtctgtaacattcttgtttttgtcattgt |
212 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| |||| | || |||| ||| ||||| |||| |||||||||| ||||||||||| |||||||||| |
|
|
| T |
36611772 |
gaaacgtctgggaactattttacataggtgaccactgtcggaggaggatcagtatcaacaacaagggtagagtctgagacattcttgttattgtcattgt |
36611871 |
T |
|
| Q |
213 |
cagaat |
218 |
Q |
| |
|
||||| |
|
|
| T |
36611872 |
tagaat |
36611877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 319
Target Start/End: Complemental strand, 32893803 - 32893715
Alignment:
| Q |
229 |
gataattccttagattgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgacta |
319 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||| |||| ||||||||||||| ||| ||| || |||||| ||||||||||||||| |
|
|
| T |
32893803 |
gataatttcttagattgttgtttgcggatgactgaaggatcataacctgcaaaacaagaaaataacaa-gtaaaa-cctgaggcgtgacta |
32893715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 8878854 - 8878927
Alignment:
| Q |
305 |
cctgaggcgtgactaagtcactggactaaggaattatccgcagaattgcgcaactccgccagaatacaacaggt |
378 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||||| ||| ||||||||| ||| |||||||||||||||| |
|
|
| T |
8878854 |
cctgaggcgtgactacgtcactgaactaaacaattatcagcaagattgcgcaattcccccagaatacaacaggt |
8878927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 330 - 378
Target Start/End: Original strand, 32893791 - 32893839
Alignment:
| Q |
330 |
ctaaggaattatccgcagaattgcgcaactccgccagaatacaacaggt |
378 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
32893791 |
ctaagaaattatccgcagaattgcgcaactcccccagagtacaacaggt |
32893839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 244 - 378
Target Start/End: Complemental strand, 8111 - 7979
Alignment:
| Q |
244 |
tgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatcc |
343 |
Q |
| |
|
|||||| |||||||||| |||| |||| ||||||||||||| ||| ||||||| ||||||| ||||| ||||||| ||||||| ||||||||||||||| |
|
|
| T |
8111 |
tgttgactgcggatgacggaaggatcataacctgcaaaacaagaaaataaaaag-taaaacc-tgaggtgtgactatgtcactgaactaaggaattatcc |
8014 |
T |
|
| Q |
344 |
gcagaattgcgcaactccgccagaatacaacaggt |
378 |
Q |
| |
|
||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
8013 |
gcaaaattgcgcaactcccccagagtacaacaggt |
7979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 221 - 375
Target Start/End: Complemental strand, 47323427 - 47323278
Alignment:
| Q |
221 |
tctccagcgataattccttagattgttgaatgcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaa |
320 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||| |||||| |||||||| ||||||||| |
|
|
| T |
47323427 |
tctccagccataattccttagattgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaataaaaa-gtaaaacc----tgcgtgactat |
47323333 |
T |
|
| Q |
321 |
gtcactggactaaggaattatccgcagaattgcgcaactccgccagaatacaaca |
375 |
Q |
| |
|
||||| | |||||||||||||||||| |||||||||| ||| | ||| ||||||| |
|
|
| T |
47323332 |
gtcaccgaactaaggaattatccgcaaaattgcgcaattccccaagagtacaaca |
47323278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 252 - 359
Target Start/End: Complemental strand, 47326973 - 47326868
Alignment:
| Q |
252 |
gcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatccgcagaatt |
351 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| ||| |||| || ||||| ||||||||||||| ||||| | ||||||||| ||||||||||||| |
|
|
| T |
47326973 |
gcggatgacagaaggatcacaacctgcaaaacaagaaagtaaagag-taaaatt-tgaggcgtgactatgtcacagaactaaggaaatatccgcagaatt |
47326876 |
T |
|
| Q |
352 |
gcgcaact |
359 |
Q |
| |
|
|||||||| |
|
|
| T |
47326875 |
gcgcaact |
47326868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 306 - 378
Target Start/End: Original strand, 13016402 - 13016474
Alignment:
| Q |
306 |
ctgaggcgtgactaagtcactggactaaggaattatccgcagaattgcgcaactccgccagaatacaacaggt |
378 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||||||| ||||||||||| |||| | ||| | |||||||||| |
|
|
| T |
13016402 |
ctgaggcgtgacaatgtcactgaactaaggaattatctgcagaattgcgtaacttccccatagtacaacaggt |
13016474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 206259 - 206191
Alignment:
| Q |
307 |
tgaggcgtgactaagtcactggactaaggaattatccgcagaattgcgcaactccgccagaatacaaca |
375 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||| || ||| |||||||||| ||||||||||||| |
|
|
| T |
206259 |
tgaggcgtgactaggtcattggactaaggaattatccacataatagcgcaactcccccagaatacaaca |
206191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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