View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12563_high_1 (Length: 551)
Name: NF12563_high_1
Description: NF12563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12563_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 256 - 533
Target Start/End: Original strand, 32141247 - 32141524
Alignment:
| Q |
256 |
ttcttgcatctatacagaagaattaattagagtcaactgtggcacgtgattaagtactactggtgaagtaatttagagtgttctaaatcagtgaataaac |
355 |
Q |
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| T |
32141247 |
ttcttgcatctatacagaagaattaattagagtcaactgtggcacgtgattaagtactactggtgaagtaatttagagtgttctaaatcagtgaataaac |
32141346 |
T |
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| Q |
356 |
attaaactaatgattaagatgcttcaacattaatgctttcagacgagggtcggtggtcttttttaaaaaatggcaaacattctgataattggttactact |
455 |
Q |
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| T |
32141347 |
attaaactaatgattaagatgcttcaacattaatgctttcagacgagggtcggtggtcttttttaaaaaatggcaaacattctgataattggttactact |
32141446 |
T |
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| Q |
456 |
aacatgcttagcgaacagaatataaaaacattttgttttatgctagagttatatttatatagttgcttatggctttgt |
533 |
Q |
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| T |
32141447 |
aacatgcttagcgaacagaatataaaaacattttgttttatgctagagttatatttatatagttgcttatggctttgt |
32141524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 32141023 - 32141239
Alignment:
| Q |
9 |
agcagagatactttgcatccagatgaaacatgatgatcagcctctaatgcaaaatcaagaaatagcccttgatcataaaccttatgatctccctcagtac |
108 |
Q |
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| T |
32141023 |
agcagagatactttgcatccagatgaaacatgatgatcagcctctaatgcaaaatcaagaaatagcccttgatcataaaccttatgatctccctcagtac |
32141122 |
T |
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| Q |
109 |
ttcaactttccttcttcaagcaatgtaattcatcatgattctttctcaagagagagaatcttttgatttttt-atgtgacatggtttcttgaatgaaaaa |
207 |
Q |
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| T |
32141123 |
ttcaactttccttcttcaagcaatgtaattcatcatgattctttctcaagagagagaattttttgattttttgatgtgacatggtttcttgaatgaaaaa |
32141222 |
T |
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| Q |
208 |
tgttcacatggttttga |
224 |
Q |
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| T |
32141223 |
tgttcacatggttttga |
32141239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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