View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12563_high_2 (Length: 531)
Name: NF12563_high_2
Description: NF12563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12563_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 72 - 514
Target Start/End: Original strand, 46665319 - 46665740
Alignment:
| Q |
72 |
tcattatagcaataaggattaaaccaattttatataagctttattgactttcctaatgcgtaactaattcagttacattcagttataagcagttataagc |
171 |
Q |
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| T |
46665319 |
tcattatagcaataaggattataccaattttatataagctttattgactttcctaatgcgtaactaattcagttacattcagttataagca--------- |
46665409 |
T |
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| Q |
172 |
aataacagaaactatatgtacaccgaactaagtaactaacttcccaaactataaaagtcctaagccaaatgctaacactt-----cccaaactattatta |
266 |
Q |
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| T |
46665410 |
-ataacagaaactat--gtacaccaaactaagtaactaacttcccaaactataaaagtcctaagccaa-tgctaacacttaacttcccaaactataa--- |
46665502 |
T |
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| Q |
267 |
taattacgtacttttctgtttccaaatagctagtgcattatattccaagatctatcgtttctcttgcatgcaacaaaacaagctcgtcatctcatgtatg |
366 |
Q |
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| T |
46665503 |
----------cttctctgtttccaaatagctagtgcattatattccaagatcgatcgtttctcttgcatgcaacaaaacaagctcgtcatctcatgtatg |
46665592 |
T |
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| Q |
367 |
ttcttattgtgagctatttgaagaattttcttatctataattaaagaactgtgcaataatttaattctcttggtggaaaaactttgcagattgcatggtg |
466 |
Q |
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| T |
46665593 |
ttcttattgtgagctatttgaagaattttcttatctataattaaagaactgtgcaagaatttaattctcttggtggaaaaactttgcagattgcatggtg |
46665692 |
T |
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| Q |
467 |
ttaaatcttgatttaacatcatcttaatagcagcgaggtacttcatct |
514 |
Q |
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| T |
46665693 |
ttaaatcttgatttaacatcatcttaatagcagcgaggtacgtcatct |
46665740 |
T |
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