View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12563_high_3 (Length: 501)
Name: NF12563_high_3
Description: NF12563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12563_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 17 - 501
Target Start/End: Original strand, 35915702 - 35916186
Alignment:
| Q |
17 |
acaaagaagagcaaaagtgtgacaaaatgtcattatcttcatcttcttctccgctaccaagcgaatcagaggaggagttgcagcacatgccattggcgcc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35915702 |
acaaagaagagcaaaagtgtgacaaaatgtcattatcttcatcttcttctccgctaccaagcgaatcggaggaggagttgcagcacatgccattggcgcc |
35915801 |
T |
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| Q |
117 |
ggtggcgtggaacaataggaggaggctatcgaagcagctatcgatgtgcgagaagccgagagatatggcttgggagagaaggaggagacaagaaataagg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915802 |
ggtggcgtggaacaataggaggaggctatcgaagcagctatcgatgtgcgagaagccgagagatatggcttgggagagaaggaggagacaagaaataagg |
35915901 |
T |
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| Q |
217 |
aggagtattgttcaagattgtgtttgtgatgatataactgatgatgatttgcatgaacttaaaggatgcattgaacttgggtttggattcaatgaagaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915902 |
aggagtattgttcaagattgtgtttgtgatgatataactgatgatgatttgcatgaacttaaaggatgcattgaacttgggtttggattcaatgaagaag |
35916001 |
T |
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| Q |
317 |
atggtcagagattgtgtaatacattgcctgcccttgatctttattttgctgttaatagaggtttgtcaccaagccctgtttctacacctcaaagtcgtgc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916002 |
atggtcagagattgtgtaatacattgcctgcccttgatctttattttgctgttaatagaggtttgtcaccaagccctgtttctacacctcaaagtcgtgc |
35916101 |
T |
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| Q |
417 |
ttcatcccttggggctcgttcttcttcctttggaagccctagaagtgatgctgactcatggaagatttgtagcccaggttaactt |
501 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916102 |
ttcatcccttggggctcgttcttcttcctttggaagccctagaagtgatgctgactcatggaagatttgtagcccaggttaactt |
35916186 |
T |
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