View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12563_high_7 (Length: 318)
Name: NF12563_high_7
Description: NF12563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12563_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 99 - 300
Target Start/End: Original strand, 404085 - 404286
Alignment:
| Q |
99 |
tctctccaagagatggaacattcgtcctctatggcctttcgttcccgttatagacttcagcttttcaaccatattttttcctccatgtttcttgagcgag |
198 |
Q |
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| T |
404085 |
tctctccaagagatggaacattcgtcccctatggcctttcgttcccgttatagacttcagcgtttcaaccatattttttcctccatttttcttgagcgag |
404184 |
T |
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| Q |
199 |
aactcgttggttttcattccatcaacagtttcttcctcgacattgaatacgattcatttcaaattcctcaacaaatggatcaactatatatgctgataat |
298 |
Q |
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| T |
404185 |
aactcgttggttttcattccatcaacagtttcttcctcgacattgaatacaattcatttcaaattcctcaacaaatggttcaactatatatgctgttaat |
404284 |
T |
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| Q |
299 |
gt |
300 |
Q |
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|| |
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| T |
404285 |
gt |
404286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 404043 - 404090
Alignment:
| Q |
15 |
agacaggttgagcagtttaccagatgagatcatttgccacattctctc |
62 |
Q |
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| T |
404043 |
agacaggttgagcagtttaccagatgagatcatttgccacattctctc |
404090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 975497 - 975456
Alignment:
| Q |
212 |
tcattccatcaacagtttcttcctcgacattgaatacgattc |
253 |
Q |
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| T |
975497 |
tcattccatcaacactttcatccttgacattgaatacgattc |
975456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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