View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12563_low_11 (Length: 249)
Name: NF12563_low_11
Description: NF12563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12563_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 37 - 231
Target Start/End: Original strand, 39933339 - 39933534
Alignment:
| Q |
37 |
cataaaaatattaattttaaatttgacatcacccccnnnnnnnnnn-tagtatgcaaaactttcccgaaattgagtaaattttcggaaaacatagagtta |
135 |
Q |
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| T |
39933339 |
cataaaaatattaattttatatttgacatcaccctcaaaaaaaaaaatagtatgcaaaactttcccgaaattgagaaaattttcggaaaacatagagtta |
39933438 |
T |
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| Q |
136 |
agtttgtcgtagagaaatttataaaccaaaaaactcgaataaattttttcaaaatttagtgtattattgcataacattcgtcttcgccctataccc |
231 |
Q |
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| T |
39933439 |
agtttgtcgtagagaaatttataaaccaaaaaactcgaataaattttttcaaaatttagtgtattattgcataccattcgtcttcgccctataccc |
39933534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39933272 - 39933309
Alignment:
| Q |
1 |
cacacataaaccacgtcttgaaaattatgccttataca |
38 |
Q |
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| T |
39933272 |
cacacataaaccacgtcttgaaaattatgccttataca |
39933309 |
T |
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