View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12563_low_12 (Length: 227)
Name: NF12563_low_12
Description: NF12563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12563_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 8756914 - 8757044
Alignment:
| Q |
10 |
gagcagagacagagggttcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgc |
109 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8756914 |
gagcaaagacagagggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgc |
8757013 |
T |
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| Q |
110 |
atcccctaagcccaacgtgggtccgccactg |
140 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8757014 |
atcccctaagcccaacgtgggtccgccactg |
8757044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 27984570 - 27984700
Alignment:
| Q |
10 |
gagcagagacagagggttcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgc |
109 |
Q |
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||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27984570 |
gagcaaagacagatggttcatagttaaattttcaggggattcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgc |
27984669 |
T |
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| Q |
110 |
atcccctaagcccaacgtgggtccgccactg |
140 |
Q |
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|||||||||||||||| |||||||||||||| |
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| T |
27984670 |
atcccctaagcccaacatgggtccgccactg |
27984700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 32568961 - 32568834
Alignment:
| Q |
10 |
gagcagagacagagggttcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgc |
109 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
32568961 |
gagcaaagatagagggttcatagttaaattttcagggggttcattcaacacaaagatagaaaattaggtgcaaatataaaatttga--ggatgcagctgc |
32568864 |
T |
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| Q |
110 |
atcccctaagcccaacgtgggtccgccactg |
140 |
Q |
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||||||| |||||||||||||||||||||| |
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| T |
32568863 |
atcccct-ggcccaacgtgggtccgccactg |
32568834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 40864789 - 40864919
Alignment:
| Q |
10 |
gagcagagacagagggttcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgc |
109 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40864789 |
gagcaaagacagagggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgc |
40864888 |
T |
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| Q |
110 |
atcccctaagcccaacgtgggtccgccactg |
140 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
40864889 |
atcccctaagcccaacgtgggtccgccactg |
40864919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 20030463 - 20030587
Alignment:
| Q |
16 |
agacagagggttcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatcccc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20030463 |
agacagagggttcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatcccc |
20030562 |
T |
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| Q |
116 |
taagcccaacgtgggtccgccactg |
140 |
Q |
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| T |
20030563 |
tgagcccaacgtgggtccgccactg |
20030587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 5375489 - 5375386
Alignment:
| Q |
10 |
gagcagagacagagggttcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgc |
109 |
Q |
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||||| |||||| |||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| ||| ||| |||||||||||||||||||||| |
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| T |
5375489 |
gagcaaagacag-gggttcatagttaaattttcagagggttcattcaagaaaaagttaaaaaattaggtccaaatatgaaatttgaggggatgcagctgc |
5375391 |
T |
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| Q |
110 |
atccc |
114 |
Q |
| |
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||||| |
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| T |
5375390 |
atccc |
5375386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 545119 - 545047
Alignment:
| Q |
140 |
gagtgagactaatgtcaagtagacagctcagttggttccaagtagacaactcagagttaacggacaatctgtg |
212 |
Q |
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| T |
545119 |
gagtgcgactaatgtcaagtagacagctcagttggttccaagtagacaactcagagttaacggacaatctgtg |
545047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 40608539 - 40608567
Alignment:
| Q |
88 |
aaatttgaggggatgcagctgcatcccct |
116 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
40608539 |
aaatttgaggggatgcagctgcatcccct |
40608567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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