View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12563_low_3 (Length: 501)

Name: NF12563_low_3
Description: NF12563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12563_low_3
NF12563_low_3
[»] chr1 (1 HSPs)
chr1 (17-501)||(35915702-35916186)


Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 17 - 501
Target Start/End: Original strand, 35915702 - 35916186
Alignment:
Q  17 acaaagaagagcaaaagtgtgacaaaatgtcattatcttcatcttcttctccgctaccaagcgaatcagaggaggagttgcagcacatgccattggcgcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35915702 acaaagaagagcaaaagtgtgacaaaatgtcattatcttcatcttcttctccgctaccaagcgaatcggaggaggagttgcagcacatgccattggcgcc 35915801  T
Q  117 ggtggcgtggaacaataggaggaggctatcgaagcagctatcgatgtgcgagaagccgagagatatggcttgggagagaaggaggagacaagaaataagg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35915802 ggtggcgtggaacaataggaggaggctatcgaagcagctatcgatgtgcgagaagccgagagatatggcttgggagagaaggaggagacaagaaataagg 35915901  T
Q  217 aggagtattgttcaagattgtgtttgtgatgatataactgatgatgatttgcatgaacttaaaggatgcattgaacttgggtttggattcaatgaagaag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35915902 aggagtattgttcaagattgtgtttgtgatgatataactgatgatgatttgcatgaacttaaaggatgcattgaacttgggtttggattcaatgaagaag 35916001  T
Q  317 atggtcagagattgtgtaatacattgcctgcccttgatctttattttgctgttaatagaggtttgtcaccaagccctgtttctacacctcaaagtcgtgc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35916002 atggtcagagattgtgtaatacattgcctgcccttgatctttattttgctgttaatagaggtttgtcaccaagccctgtttctacacctcaaagtcgtgc 35916101  T
Q  417 ttcatcccttggggctcgttcttcttcctttggaagccctagaagtgatgctgactcatggaagatttgtagcccaggttaactt 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35916102 ttcatcccttggggctcgttcttcttcctttggaagccctagaagtgatgctgactcatggaagatttgtagcccaggttaactt 35916186  T

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