View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12563_low_4 (Length: 408)
Name: NF12563_low_4
Description: NF12563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12563_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 11 - 402
Target Start/End: Complemental strand, 36063789 - 36063398
Alignment:
| Q |
11 |
aacctggattattcttagggtcctctatgttgacgtctatttttccttgaactagaccatttatttagaagaaaaagttgcctgtgtttactttttaatc |
110 |
Q |
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| T |
36063789 |
aacctggattattcttagggtcctctatgttgacgtctatttttccttgaactagaccatttatttagaagaaaaagttgcctgtgtttactttttaatc |
36063690 |
T |
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| Q |
111 |
ttctagataagaagaacttaaatttactttgaaatgcggggcagcaatagaaaatattaggtgattaaaatagaaattatttttctttcaatattgttgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36063689 |
ttctagataagaagaacttaaatttactttgaaatgcggggcagcaatagaaaatattaggtgattaaaatagaaattatttttctttcaatattgttgt |
36063590 |
T |
|
| Q |
211 |
gtgagacaactgacaactgaggaagctatttgtgtgacaaattaaagtctcttactctcttttaaattgaattttgatcatatttttgcaatgaaaatat |
310 |
Q |
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| T |
36063589 |
gtgtgacaactgacaactgaggaagctatttgtgtgacaaattaaagtctcttactctcttttaaattaaattttgatcatatttttgcaatgaaaatat |
36063490 |
T |
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| Q |
311 |
gtaattttaacaagcaattatttttgcacaccttcatttttcctacactaattcaacacttcattttctctctatctttatattcatctcac |
402 |
Q |
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| T |
36063489 |
gtaattttaacaagcaattatttttgcacaccttcatttttcctacactaattcaatacttcattttctctctatcttaatattcatatcac |
36063398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 387
Target Start/End: Original strand, 30957628 - 30957667
Alignment:
| Q |
348 |
ttttcctacactaattcaacacttcattttctctctatct |
387 |
Q |
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| T |
30957628 |
ttttcctacactcattcaacactttattttctctctatct |
30957667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 389
Target Start/End: Original strand, 21549911 - 21549939
Alignment:
| Q |
361 |
attcaacacttcattttctctctatcttt |
389 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
21549911 |
attcaacacttcattttctctctatcttt |
21549939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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