View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12563_low_5 (Length: 370)

Name: NF12563_low_5
Description: NF12563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12563_low_5
NF12563_low_5
[»] chr6 (42 HSPs)
chr6 (54-266)||(27682180-27682392)
chr6 (79-360)||(27715142-27715421)
chr6 (112-270)||(27695297-27695455)
chr6 (11-255)||(27589855-27590105)
chr6 (56-268)||(27674266-27674484)
chr6 (129-217)||(26146295-26146383)
chr6 (266-360)||(27682419-27682513)
chr6 (284-360)||(26852086-26852162)
chr6 (274-366)||(27703475-27703567)
chr6 (197-268)||(27607818-27607889)
chr6 (197-357)||(28789780-28789934)
chr6 (195-268)||(27657421-27657494)
chr6 (54-171)||(27607948-27608053)
chr6 (296-357)||(26650063-26650124)
chr6 (296-357)||(26756031-26756092)
chr6 (284-357)||(28782487-28782560)
chr6 (304-366)||(25486839-25486901)
chr6 (197-351)||(28795798-28795946)
chr6 (129-170)||(25486668-25486709)
chr6 (284-357)||(26626660-26626733)
chr6 (284-357)||(26732637-26732710)
chr6 (298-353)||(25548432-25548487)
chr6 (129-168)||(26059223-26059262)
chr6 (129-168)||(26079193-26079232)
chr6 (197-239)||(26059309-26059351)
chr6 (197-239)||(26079279-26079321)
chr6 (119-169)||(27657544-27657594)
chr6 (129-170)||(25514161-25514202)
chr6 (119-171)||(26805825-26805877)
chr6 (129-164)||(25583014-25583049)
chr6 (193-264)||(31287988-31288059)
chr6 (197-239)||(25514246-25514288)
chr6 (197-239)||(25548358-25548400)
chr6 (197-239)||(25583088-25583130)
chr6 (310-366)||(26146443-26146499)
chr6 (299-358)||(26953146-26953205)
chr6 (308-366)||(27078805-27078864)
chr6 (197-239)||(25486757-25486799)
chr6 (193-243)||(26876970-26877020)
chr6 (193-233)||(26626533-26626573)
chr6 (193-233)||(26732510-26732550)
chr6 (228-268)||(27703603-27703643)
[»] scaffold0349 (1 HSPs)
scaffold0349 (79-360)||(16524-16802)
[»] chr8 (2 HSPs)
chr8 (197-360)||(29270446-29270609)
chr8 (43-171)||(29270668-29270784)
[»] scaffold0277 (3 HSPs)
scaffold0277 (197-357)||(10265-10419)
scaffold0277 (193-357)||(1305-1463)
scaffold0277 (119-159)||(1524-1564)
[»] scaffold0419 (1 HSPs)
scaffold0419 (284-357)||(11005-11078)
[»] chr1 (3 HSPs)
chr1 (103-168)||(265145-265210)
chr1 (193-268)||(265012-265087)
chr1 (120-168)||(26139328-26139376)
[»] chr4 (5 HSPs)
chr4 (119-166)||(18686451-18686498)
chr4 (119-166)||(18696257-18696304)
chr4 (119-168)||(18676409-18676458)
chr4 (130-166)||(18652350-18652386)
chr4 (198-234)||(18696165-18696201)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 54 - 266
Target Start/End: Original strand, 27682180 - 27682392
Alignment:
Q  54 accatacaactttgtttcatacctcgaaattgaatgaactcattaaaacacaatgcgagtataacatggagaaaggacttttgaaaaatgaatggatcca 153  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |    
T  27682180 accatacaactttgtttcatacctcaaaattgaatgaactcattaaaacacaatgcgagtataatatagagaaaggacttttgaaaaatgaatggatcta 27682279  T
Q  154 tgtggagtttaagttggaggatcaagagaatagtgtttatgcacaaatgggaatccacgtgtggaatgagaaaagcaacatggaggaggagaatgtggta 253  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27682280 tgtggagtttaagttgaaggatcatgagaatagtgtttatgcacaaaggggaatccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggta 27682379  T
Q  254 ttcactgatcctt 266  Q
    ||||| |||||||    
T  27682380 ttcacagatcctt 27682392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 79 - 360
Target Start/End: Complemental strand, 27715421 - 27715142
Alignment:
Q  79 gaaattgaatgaactcattaaaacacaatgcgagtataacatggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagttggaggatcaa 178  Q
    ||||||| |||||||   ||||| |||||  |||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||     
T  27715421 gaaattgtatgaactaggtaaaagacaatatgagtataatatggacaaaggacttttgaaaagtgaatggatccatgtggagtttaagttgaaggatcac 27715322  T
Q  179 gagaatagtgtttatgcacaaatgggaatccacgtgtggaatgagaaaagcaacatggaggaggagaatgtggtattcactgatccttatctcaattata 278  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||| |||  ||    
T  27715321 gagaatagtgtttatacacaaatgggagtccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtattcaaagatccttatctaaat--ta 27715224  T
Q  279 gaaataatacttcatggtcacaatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagagacagagga 360  Q
    | |||||||||||||  |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  27715223 gcaataatacttcattatcacaatttgagcctcctctaaaaaagcaaagattggtggaagtgggagtttcagagacagagga 27715142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 112 - 270
Target Start/End: Complemental strand, 27695455 - 27695297
Alignment:
Q  112 gtataacatggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagttggaggatcaagagaatagtgtttatgcacaaatgggaatccac 211  Q
    |||||| ||||| |||||||||||||||| ||||||||||||||||||||||| || | ||||||| |||||||||||||||||||||||||||||||||    
T  27695455 gtataatatggacaaaggacttttgaaaagtgaatggatccatgtggagtttaggtcgaaggatcacgagaatagtgtttatgcacaaatgggaatccac 27695356  T
Q  212 gtgtggaatgagaaaagcaacatggaggaggagaatgtggtattcactgatccttatct 270  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  27695355 gtgtggaatgagaaaagcaacacggaggaggagaatgtggtattcacagatccttatct 27695297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 27590105 - 27589855
Alignment:
Q  11 atgaagatagattattgctaccgcttttggtctgtgatctggaaccatacaactttgtttcatacctcgaaattgaatgaactcattaaaacacaatgcg 110  Q
    |||||||||||||||||  |||||||| | | ||||  |   || ||||||| ||||||||||||| |||||||||||||||||| ||||| |||||  |    
T  27590105 atgaagatagattattgtcaccgctttagctatgtgtaccttaagcatacaaatttgtttcataccccgaaattgaatgaactcagtaaaagacaatttg 27590006  T
Q  111 agtataacatggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagttggaggatcaagagaatagtgttt------atgcacaaatggg 204  Q
    ||||||  ||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||  || ||||   | |      |||||||||||||    
T  27590005 agtatataatggacaaaggacttttgaaaaatgaatggatccatgtggaatttaagttgaaggatcgtgacaatataatattcagaaatgcacaaatggg 27589906  T
Q  205 aatccacgtgtggaatgagaaaagcaacatggaggaggagaatgtggtatt 255  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  27589905 aatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatt 27589855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 56 - 268
Target Start/End: Complemental strand, 27674484 - 27674266
Alignment:
Q  56 catacaactttgtttcatacctcgaaattgaatgaactcattaaaacacaatgcgagtataacatggagaaaggacttttgaaaaatgaatggatccatg 155  Q
    ||||||| ||||||||||||| |||||||||||||||||  |||||  ||||  |||||||  |||||||||||||||||||||||||||||||||||||    
T  27674484 catacaaatttgtttcataccccgaaattgaatgaactcggtaaaaggcaatttgagtatataatggagaaaggacttttgaaaaatgaatggatccatg 27674385  T
Q  156 tggagtttaagttggaggatcaagagaatagtgttt------atgcacaaatgggaatccacgtgtggaatgagaaaagcaacatggaggaggagaatgt 249  Q
    ||||||||||| || ||||||  || ||||   | |      |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  27674384 tggagtttaaggtgaaggatcgtgacaatataatattcagaaatgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgt 27674285  T
Q  250 ggtattcactgatccttat 268  Q
    |||||| |  |||||||||    
T  27674284 ggtatttatcgatccttat 27674266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 26146295 - 26146383
Alignment:
Q  129 gacttttgaaaaatgaatggatccatgtggagtttaagttggaggatcaagagaatagtgtttatgcacaaatgggaatccacgtgtgg 217  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  26146295 gacttttgaaaaaggaatggatccatgtggagtttaagttgaaggatcacgagaatagtgtttatgcacaaatgggaatccacgtgtgg 26146383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 266 - 360
Target Start/End: Original strand, 27682419 - 27682513
Alignment:
Q  266 tatctcaattatagaaataatacttcatggtcacaatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagagacagagga 360  Q
    ||||||||| | || |||||||||||||  |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27682419 tatctcaatcagagcaataatacttcattatcacaatttgagcctcctctaaaaaagcaaagattggtggaagttggagtttcagagacagagga 27682513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 26852086 - 26852162
Alignment:
Q  284 aatacttcatggtcacaatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagagacagagga 360  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26852086 aatacttcattatcacaatttgtgcctcctctaaaaaagcaaagattgatggaagttagagtttcagagacagagga 26852162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 274 - 366
Target Start/End: Complemental strand, 27703567 - 27703475
Alignment:
Q  274 ttatagaaataatacttcatggtcacaatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagagacagaggaagagga 366  Q
    |||||| |||||||||||||  |||||||||||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||||||||    
T  27703567 ttatagcaataatacttcattatcacaatttgtgcctcctctaaaaaagcaaagatcggtggaaatgggagtttcagagacagaggaagagga 27703475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 27607889 - 27607818
Alignment:
Q  197 caaatgggaatccacgtgtggaatgagaaaagcaacatggaggaggagaatgtggtattcactgatccttat 268  Q
    |||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||    
T  27607889 caaatgggaatccacgtgtggaatgagaaaagcaacacagaggagaagaatgtggtattcactgatccttat 27607818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 197 - 357
Target Start/End: Original strand, 28789780 - 28789934
Alignment:
Q  197 caaatgggaatccacgtgtggaatgagaaaagcaacatggaggaggagaatgtggtattcactgatccttatctcaattatagaaataatacttcatggt 296  Q
    |||||||||||||||||| | || ||||||||||||   |  |||||||||||| ||||||| |||||||||    | ||||||   ||||||||||  |    
T  28789780 caaatgggaatccacgtgagtaaggagaaaagcaac---gcagaggagaatgtgatattcaccgatccttatagagaatataga---aatacttcattat 28789873  T
Q  297 cacaatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagagacaga 357  Q
    ||||||||| ||||||||| ||||||||||||||| ||||||| | |||||||||||||||    
T  28789874 cacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagagacaga 28789934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 27657494 - 27657421
Alignment:
Q  195 cacaaatgggaatccacgtgtggaatgagaaaagcaacatggaggaggagaatgtggtattcactgatccttat 268  Q
    ||||||||||||||||||||| |||  |||||||||||||||| |||||| |||||||||||||||||||||||    
T  27657494 cacaaatgggaatccacgtgttgaagaagaaaagcaacatggatgaggaggatgtggtattcactgatccttat 27657421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 27608053 - 27607948
Alignment:
Q  54 accatacaactttgtttcatacctcgaaattgaatgaactcattaaaacacaatgcgagtataacatggagaaaggacttttgaaaaatgaatggatcca 153  Q
    |||||||||||||||||||||||||||||||||||  | ||| ||||| ||||||||||            |||| ||||||||||||||||||||||||    
T  27608053 accatacaactttgtttcatacctcgaaattgaatagattcagtaaaagacaatgcgag------------aaagaacttttgaaaaatgaatggatcca 27607966  T
Q  154 tgtggagtttaagttgga 171  Q
    ||||||||||||||||||    
T  27607965 tgtggagtttaagttgga 27607948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 296 - 357
Target Start/End: Original strand, 26650063 - 26650124
Alignment:
Q  296 tcacaatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagagacaga 357  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  26650063 tcacaatttgtgcctcctctaaaaaagcaaagattggtggaagtgggagtttcaaagacaga 26650124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 296 - 357
Target Start/End: Original strand, 26756031 - 26756092
Alignment:
Q  296 tcacaatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagagacaga 357  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  26756031 tcacaatttgtgcctcctctaaaaaagcaaagattggtggaagtgggagtttcaaagacaga 26756092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 28782487 - 28782560
Alignment:
Q  284 aatacttcatggtcacaatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagagacaga 357  Q
    ||||||||||  |||||||||| ||||||||| ||||||||||||||| ||||||| | |||||||||||||||    
T  28782487 aatacttcattatcacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagagacaga 28782560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 25486839 - 25486901
Alignment:
Q  304 tgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagagacagaggaagagga 366  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||| || ||| |||||    
T  25486839 tgtgcctcctctaaaaaagcaaagattggtggaagtgggagtttcagagaaaggggaggagga 25486901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 351
Target Start/End: Original strand, 28795798 - 28795946
Alignment:
Q  197 caaatgggaatccacgtgtggaatgagaaaagcaacatggaggaggagaatgtggtattcactgatccttatctcaattatagaaataatacttcatggt 296  Q
    |||||||||||||||||| |||| ||||||||||||   |  |||||||||||| ||||||| |||||| ||      | ||||||||   ||||||  |    
T  28795798 caaatgggaatccacgtgaggaaggagaaaagcaac---gcagaggagaatgtgatattcaccgatcctcatagaggatttagaaata---cttcattat 28795891  T
Q  297 cacaatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcaga 351  Q
    ||||||||| ||||||||| ||||||||||||||| ||||||| | |||||||||    
T  28795892 cacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcaga 28795946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 25486668 - 25486709
Alignment:
Q  129 gacttttgaaaaatgaatggatccatgtggagtttaagttgg 170  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25486668 gacttttgaaaaatgaatggatccatgtggagtttaagttgg 25486709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 26626660 - 26626733
Alignment:
Q  284 aatacttcatggtcacaatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagagacaga 357  Q
    ||||||||||  ||||| |||| ||||||||| ||||||||||||||| ||||| | |||||||||||||||||    
T  26626660 aatacttcattatcacagtttgagcctcctctgaaaaagcaaagattggtggaaatgggagtttcagagacaga 26626733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 26732637 - 26732710
Alignment:
Q  284 aatacttcatggtcacaatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagagacaga 357  Q
    ||||||||||  ||||| |||| ||||||||| ||||||||||||||| ||||| | |||||||||||||||||    
T  26732637 aatacttcattatcacagtttgagcctcctctgaaaaagcaaagattggtggaaatgggagtttcagagacaga 26732710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 25548432 - 25548487
Alignment:
Q  298 acaatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagaga 353  Q
    ||||||| ||||||||| |||||||||||||||| ||||||| |||||||||||||    
T  25548432 acaatttatgcctcctcaaaaaaagcaaagattggtggaagtgggagtttcagaga 25548487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 26059223 - 26059262
Alignment:
Q  129 gacttttgaaaaatgaatggatccatgtggagtttaagtt 168  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26059223 gacttttgaaaaatgaatggatccatgtggagtttaagtt 26059262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 26079193 - 26079232
Alignment:
Q  129 gacttttgaaaaatgaatggatccatgtggagtttaagtt 168  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26079193 gacttttgaaaaatgaatggatccatgtggagtttaagtt 26079232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 26059309 - 26059351
Alignment:
Q  197 caaatgggaatccacgtgtggaatgagaaaagcaacatggagg 239  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  26059309 caaatgggaatccacgtgtggaaggagaaaagcaacatggagg 26059351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 26079279 - 26079321
Alignment:
Q  197 caaatgggaatccacgtgtggaatgagaaaagcaacatggagg 239  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  26079279 caaatgggaatccacgtgtggaaggagaaaagcaacatggagg 26079321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 27657594 - 27657544
Alignment:
Q  119 atggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagttg 169  Q
    ||||| |||| ||||||||||||||||||||||||||||||| ||||||||    
T  27657594 atggacaaagaacttttgaaaaatgaatggatccatgtggagcttaagttg 27657544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 25514161 - 25514202
Alignment:
Q  129 gacttttgaaaaatgaatggatccatgtggagtttaagttgg 170  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  25514161 gacttttgaaaaatgaatggatacatgtggagtttaagttgg 25514202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 26805825 - 26805877
Alignment:
Q  119 atggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagttgga 171  Q
    ||||| |||| ||||| ||||||||||||||||||||||||| ||||||||||    
T  26805825 atggacaaagtactttcgaaaaatgaatggatccatgtggagcttaagttgga 26805877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 25583014 - 25583049
Alignment:
Q  129 gacttttgaaaaatgaatggatccatgtggagttta 164  Q
    ||||||||||||||||||||||||||||||||||||    
T  25583014 gacttttgaaaaatgaatggatccatgtggagttta 25583049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 31287988 - 31288059
Alignment:
Q  193 tgcacaaatgggaatccacgtgtggaatgagaaaagcaacatggaggaggagaatgtggtattcactgatcc 264  Q
    |||||||||||||||||||||||  || ||||||| ||||   ||||||||||||||| ||||||| |||||    
T  31287988 tgcacaaatgggaatccacgtgttaaaggagaaaaacaacgcagaggaggagaatgtgatattcaccgatcc 31288059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 25514246 - 25514288
Alignment:
Q  197 caaatgggaatccacgtgtggaatgagaaaagcaacatggagg 239  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  25514246 caaatgggaatccacgtgtggaaggagaaaagcaacacggagg 25514288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 25548358 - 25548400
Alignment:
Q  197 caaatgggaatccacgtgtggaatgagaaaagcaacatggagg 239  Q
    |||||||||||||| |||||||| |||||||||||||||||||    
T  25548358 caaatgggaatccatgtgtggaaggagaaaagcaacatggagg 25548400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 25583088 - 25583130
Alignment:
Q  197 caaatgggaatccacgtgtggaatgagaaaagcaacatggagg 239  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  25583088 caaatgggaatccacgtgtggaaggagaaaagcaacacggagg 25583130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 26146443 - 26146499
Alignment:
Q  310 tcctctaaaaaagcaaagattgatggaagttggagtttcagagacagaggaagagga 366  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||| || ||| |||||    
T  26146443 tcctcaaaaaaagcaaagattggtggaagtgggagtttcagagaaaggggaggagga 26146499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 26953146 - 26953205
Alignment:
Q  299 caatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagagacagag 358  Q
    ||||||| ||||||||| |||||||| |||||  | ||||| ||||||||||||||||||    
T  26953146 caatttgagcctcctctgaaaaagcatagatttgttgaagtgggagtttcagagacagag 26953205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 366
Target Start/End: Original strand, 27078805 - 27078864
Alignment:
Q  308 cctcctctaaaaaa-gcaaagattgatggaagttggagtttcagagacagaggaagagga 366  Q
    |||||||||||||| |||| ||||| ||||||| |||||||| ||||||||||| |||||    
T  27078805 cctcctctaaaaaaagcaaggattggtggaagtgggagtttccgagacagaggaggagga 27078864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 25486757 - 25486799
Alignment:
Q  197 caaatgggaatccacgtgtggaatgagaaaagcaacatggagg 239  Q
    ||||| ||||||||||||||||| ||||||||||||| |||||    
T  25486757 caaatcggaatccacgtgtggaaggagaaaagcaacacggagg 25486799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 26876970 - 26877020
Alignment:
Q  193 tgcacaaatgggaatccacgtgtggaatgagaaaagcaacatggaggagga 243  Q
    ||||||||||||||||||||||| ||| ||||||| || ||| ||||||||    
T  26876970 tgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggagga 26877020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 26626533 - 26626573
Alignment:
Q  193 tgcacaaatgggaatccacgtgtggaatgagaaaagcaaca 233  Q
    |||||||||||||||||| |||| ||| |||||||||||||    
T  26626533 tgcacaaatgggaatccatgtgttgaaggagaaaagcaaca 26626573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 26732510 - 26732550
Alignment:
Q  193 tgcacaaatgggaatccacgtgtggaatgagaaaagcaaca 233  Q
    |||||||||||||||||| |||| ||| |||||||||||||    
T  26732510 tgcacaaatgggaatccatgtgttgaaggagaaaagcaaca 26732550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 27703643 - 27703603
Alignment:
Q  228 gcaacatggaggaggagaatgtggtattcactgatccttat 268  Q
    |||||| |||||||||||||||||||||||  |||||||||    
T  27703643 gcaacacggaggaggagaatgtggtattcatcgatccttat 27703603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 79 - 360
Target Start/End: Original strand, 16524 - 16802
Alignment:
Q  79 gaaattgaatgaactcattaaaacacaatgcgagtataacatggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagttggaggatcaa 178  Q
    ||||||| |||||||   ||||| |||||  |||||||| ||||| |||||||||| ||||| |||||||||||||||||||||||||||| |||||||     
T  16524 gaaattgtatgaactaggtaaaagacaatatgagtataatatggacaaaggacttt-gaaaagtgaatggatccatgtggagtttaagttgaaggatcac 16622  T
Q  179 gagaatagtgtttatgcacaaatgggaatccacgtgtggaatgagaaaagcaacatggaggaggagaatgtggtattcactgatccttatctcaattata 278  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||| |||  ||    
T  16623 gagaatagtgtttatacacaaatgggagtccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtattcaaagatccttatctaaat--ta 16720  T
Q  279 gaaataatacttcatggtcacaatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagagacagagga 360  Q
    | |||||||||||||  |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  16721 gcaataatacttcattatcacaatttgagcctcctctaaaaaagcaaagattggtggaagtgggagtttcagagacagagga 16802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 197 - 360
Target Start/End: Complemental strand, 29270609 - 29270446
Alignment:
Q  197 caaatgggaatccacgtgtggaatgagaaaagcaacatggaggaggagaatgtggtattcactgatccttatctcaattatagaaataatacttcatggt 296  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||  |    
T  29270609 caaatgggaatccacgtgtggaatgagaaaagcaacacggatgaggagaatgtggtattcacagatccttatctcaattatagcaataatacttcattat 29270510  T
Q  297 cacaatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagagacagagga 360  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  29270509 cacaatttgtgcctcctctaaaaaagcaaagattggtggaagtgggagtttcagagacagagga 29270446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 43 - 171
Target Start/End: Complemental strand, 29270784 - 29270668
Alignment:
Q  43 tgtgatctggaaccatacaactttgtttcatacctcgaaattgaatgaactcattaaaacacaatgcgagtataacatggagaaaggacttttgaaaaat 142  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||            |||||||||||||||||||||    
T  29270784 tgtgatctggaaccatacaactttgtttcatacctcaaaattgaatgaactcattaaaacacaatgc------------gagaaaggacttttgaaaaat 29270697  T
Q  143 gaatggatccatgtggagtttaagttgga 171  Q
    |||||||||||||||||||||||||||||    
T  29270696 gaatggatccatgtggagtttaagttgga 29270668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 197 - 357
Target Start/End: Complemental strand, 10419 - 10265
Alignment:
Q  197 caaatgggaatccacgtgtggaatgagaaaagcaacatggaggaggagaatgtggtattcactgatccttatctcaattatagaaataatacttcatggt 296  Q
    |||||||||||||||||| | || ||||||||||||   |  |||||||||||| ||||||| |||||||||    | ||||||   ||||||||||  |    
T  10419 caaatgggaatccacgtgagtaaggagaaaagcaac---gcagaggagaatgtgatattcaccgatccttatagagaatataga---aatacttcattat 10326  T
Q  297 cacaatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagagacaga 357  Q
    ||||||||| ||||||||| ||||||||||||||| ||||||| | |||||||||||||||    
T  10325 cacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagagacaga 10265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 357
Target Start/End: Complemental strand, 1463 - 1305
Alignment:
Q  193 tgcacaaatgggaatccacgtgtggaatgagaaaagcaacatggaggaggagaatgtggtattcactgatccttatctcaattatagaaataatacttca 292  Q
    |||||||||||||||||||||| |||  ||||||||||||   |  |||||||| ||| ||||||| |||||| ||    | ||||||||||   |||||    
T  1463 tgcacaaatgggaatccacgtgaggatggagaaaagcaac---gcagaggagaacgtgatattcaccgatcctcatagagaatatagaaata---cttca 1370  T
Q  293 tggtcacaatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagagacaga 357  Q
    |  | |||||||| ||||||||| ||||||||||||||| ||||||| | ||||||||| |||||    
T  1369 ttattacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagacacaga 1305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 1564 - 1524
Alignment:
Q  119 atggagaaaggacttttgaaaaatgaatggatccatgtgga 159  Q
    ||||| |||| |||||| |||||||||||||||||||||||    
T  1564 atggaaaaagcacttttaaaaaatgaatggatccatgtgga 1524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 11005 - 11078
Alignment:
Q  284 aatacttcatggtcacaatttgtgcctcctctaaaaaagcaaagattgatggaagttggagtttcagagacaga 357  Q
    ||||||||||  |||||||||| ||||||||| ||||||||||||||| ||||||| | |||||||||||||||    
T  11005 aatacttcattatcacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagagacaga 11078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 265210 - 265145
Alignment:
Q  103 acaatgcgagtataacatggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagtt 168  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||| ||||||||    
T  265210 acaatacgagtataatatggacaaaggacttttgaaaaatgaatggatccatttggaatttaagtt 265145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 265087 - 265012
Alignment:
Q  193 tgcacaaatgggaatccacgtgtggaatgagaaaagcaacatggaggaggagaatgtggtattcactgatccttat 268  Q
    |||||||||||||||||||| ||  |  ||||||||||||| ||||||||| |||||  |||||||  ||||||||    
T  265087 tgcacaaatgggaatccacgagttaatggagaaaagcaacagggaggaggataatgttatattcaccaatccttat 265012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 26139328 - 26139376
Alignment:
Q  120 tggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagtt 168  Q
    ||||| ||| |||||| |||||||||||||||||||| ||| |||||||    
T  26139328 tggaggaagcacttttaaaaaatgaatggatccatgtagagcttaagtt 26139376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 18686498 - 18686451
Alignment:
Q  119 atggagaaaggacttttgaaaaatgaatggatccatgtggagtttaag 166  Q
    ||||| |||| |||||| ||||||||||||||| ||||||||||||||    
T  18686498 atggacaaagcacttttaaaaaatgaatggatctatgtggagtttaag 18686451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 18696304 - 18696257
Alignment:
Q  119 atggagaaaggacttttgaaaaatgaatggatccatgtggagtttaag 166  Q
    ||||| |||| |||||| ||||||||||||||| ||||||||||||||    
T  18696304 atggacaaagcacttttaaaaaatgaatggatcaatgtggagtttaag 18696257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 18676458 - 18676409
Alignment:
Q  119 atggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagtt 168  Q
    ||||| |||| |||||| ||||||||||||||| |||||||||| |||||    
T  18676458 atggacaaagcacttttaaaaaatgaatggatctatgtggagttgaagtt 18676409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 18652386 - 18652350
Alignment:
Q  130 acttttgaaaaatgaatggatccatgtggagtttaag 166  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  18652386 acttttaaaaaatgaatggatctatgtggagtttaag 18652350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 18696201 - 18696165
Alignment:
Q  198 aaatgggaatccacgtgtggaatgagaaaagcaacat 234  Q
    |||||||||||||||||||||| |||||||| |||||    
T  18696201 aaatgggaatccacgtgtggaaggagaaaagtaacat 18696165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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