View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12563_low_6 (Length: 356)
Name: NF12563_low_6
Description: NF12563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12563_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 40526272 - 40525946
Alignment:
| Q |
16 |
cacatgagaataagaagtattggtaaacctcaatgaattaacacacatgcaaatgtttcgattgatcaagctgaacgccataaggaatcgtccattgttc |
115 |
Q |
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| T |
40526272 |
cacatgagaataagaagtattggtaaacctcaatgaattaacacacgtgcaaatgttacgattgatcaagctgaacgccataaggaatcgtccattgttc |
40526173 |
T |
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| Q |
116 |
agttacaagtgtatttgaagaggtaattttacgcataaaccaaaagatgcgctttcgttgctggaaaagtgtgatccaacgacattgagtttcaggcacc |
215 |
Q |
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| T |
40526172 |
agttacaagtgtatttgaagaggtaattttacgcataaaccaaaagctgcgctttcgttgctggaaaagtgtgatccaactacattgagtttcaggcacc |
40526073 |
T |
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| Q |
216 |
caggaggaggatgaactcaactatgcttttgatgtgtattgtttagttctctggaggttttggttgttgaaattcaaccacaacaaatcaatccaccaca |
315 |
Q |
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| T |
40526072 |
caggaggaggatgaactcaactatgcttttgatgtgtattgtttagttctctggaggttttggttgttgaaattcaaccataacaaatcaatccaccaca |
40525973 |
T |
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| Q |
316 |
agctgagcttctgttgctgaaaaagtg |
342 |
Q |
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| T |
40525972 |
agctgagcttctgttgctgaaaaagtg |
40525946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 22113434 - 22113495
Alignment:
| Q |
281 |
gttgaaattcaaccacaacaaatcaatccaccacaagctgagcttctgttgctgaaaaagtg |
342 |
Q |
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| T |
22113434 |
gttgaaattcaaccataacaaatcaatccaccacaagctgagcttctgttgctgaaaaagtg |
22113495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 172 - 267
Target Start/End: Original strand, 22113481 - 22113576
Alignment:
| Q |
172 |
gttgctggaaaagtgtgatccaacgacattgagtttcaggcacccaggaggaggatgaactcaactatgcttttgatgtgtattgtttagttctct |
267 |
Q |
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| T |
22113481 |
gttgctgaaaaagtgtgatccatcgacatttagtttcaggcacccatgaggaggatgaacccaactacgcttcagatgtgcattgtttatttctct |
22113576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 40525960 - 40525865
Alignment:
| Q |
172 |
gttgctggaaaagtgtgatccaacgacattgagtttcaggcacccaggaggaggatgaactcaactatgcttttgatgtgtattgtttagttctct |
267 |
Q |
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| T |
40525960 |
gttgctgaaaaagtgtgatccatcgacatttagtttcaggcacccatgaggaggatgaacccaactacgcttcagatgtgcattgtttatttctct |
40525865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 16883367 - 16883304
Alignment:
| Q |
195 |
cgacattgagtttcaggcacccaggaggaggatgaactcaactatgcttttgatgtgtattgtt |
258 |
Q |
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| T |
16883367 |
cgacattgagtttgaggcgcccaagaggaagatgaactcaactatgcttctgatgtgcattgtt |
16883304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 32739008 - 32739078
Alignment:
| Q |
174 |
tgctggaaaagtgtgatccaacgacattgagtttcaggcacccaggaggaggatgaactcaactatgcttt |
244 |
Q |
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| T |
32739008 |
tgctggtaaagtataatccatcgacattgagtttgaggcgtccaggtgaaggataaactcaactatgcttt |
32739078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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