View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12564_high_1 (Length: 464)
Name: NF12564_high_1
Description: NF12564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12564_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 98 - 450
Target Start/End: Complemental strand, 188691 - 188318
Alignment:
| Q |
98 |
cggagaggaggaatacgattatctgttcaaggtagtactgataggcgattctggtgttggtaaatcaaatcttctatcccgattcactcgcaatgaattt |
197 |
Q |
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| T |
188691 |
cggagaggaagaatacgattatctgttcaaggtagtactgataggcgattctggtgttggtaaatcaaatcttctatcccgattcactcgcaatgaattt |
188592 |
T |
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| Q |
198 |
tgtcttgagtccaagtctactattggcgttgaattcgctactcgcacccttcaggttaggttactacaag------atccatctcactcagatctcgctc |
291 |
Q |
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| T |
188591 |
tgtcttgagtccaagtctactattggcgttgaattcgctactcgcacccttcaggttaggttactacaagatctatatctatctcactcagatctcgctc |
188492 |
T |
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| Q |
292 |
gcgttcatctattcttagttgcatttattttcttagttagactagactcacatcgtgtga---------------tgatattttattagttaattaatta |
376 |
Q |
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| T |
188491 |
gcgttcatctattcttagttgcatttattttcttagttagactagactcacatcgtgtgatgatatgtatggtgctgatattttattagttaattaatta |
188392 |
T |
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| Q |
377 |
atttatattatagatatccaaagtgaatatg----tgtttgtttgttggttggcaatgcattggcaggttgaaggaag |
450 |
Q |
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| T |
188391 |
atttatatt----atatccaaagtgaatatgtgtttgtttgtttgttggttggcaatgcattggcaggttgaaggaag |
188318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 241
Target Start/End: Original strand, 31789395 - 31789513
Alignment:
| Q |
123 |
ttcaaggtagtactgataggcgattctggtgttggtaaatcaaatcttctatcccgattcactcgcaatgaattttgtcttgagtccaagtctactattg |
222 |
Q |
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| T |
31789395 |
ttcaaggtagttctgatcggcgactccggtgttggtaaatcaaatcttctctctcgtttcaccaaaaacgagttcaatcttgaatccaaatccaccattg |
31789494 |
T |
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| Q |
223 |
gcgttgaattcgctactcg |
241 |
Q |
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| T |
31789495 |
gtgttgaattcgctactcg |
31789513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 238
Target Start/End: Complemental strand, 31090264 - 31090134
Alignment:
| Q |
108 |
gaatacgattatctgttcaaggtagtactgataggcgattctggtgttggtaaatcaaatcttctatcccgattcactcgcaatgaattttgtcttgagt |
207 |
Q |
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| T |
31090264 |
gaatatgattatctgttcaagattgtactcattggagattctggtgttggaaaatccaatattctctctaggtttacccgaaatgagttttgtcttgaat |
31090165 |
T |
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| Q |
208 |
ccaagtctactattggcgttgaattcgctac |
238 |
Q |
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| T |
31090164 |
ctaaatctaccattggtgttgaattcgctac |
31090134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 253
Target Start/End: Complemental strand, 24249509 - 24249400
Alignment:
| Q |
144 |
gattctggtgttggtaaatcaaatcttctatcccgattcactcgcaatgaattttgtcttgagtccaagtctactattggcgttgaattcgctactcgca |
243 |
Q |
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| T |
24249509 |
gattctggtgttggtaaatccaacattctctctaggtttactagaaatgagttttgtttggagtctaaatctactattggtgttgaattcgccaccagaa |
24249410 |
T |
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| Q |
244 |
cccttcaggt |
253 |
Q |
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| T |
24249409 |
cccttcaggt |
24249400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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