View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12564_low_2 (Length: 328)
Name: NF12564_low_2
Description: NF12564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12564_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 11295480 - 11295800
Alignment:
| Q |
16 |
ataaggttgttgtgaaccatgcaattgcaagcatgctacaatgtagtaagcatttctaagactttcacccttcggtgacataagagaattgtaaaaggtc |
115 |
Q |
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| T |
11295480 |
ataaggttgttgtgaaccatgcaattgcaagcatgctacaatgtagtaagcatttctaagactttcacccttcagtgacataagagaattgtcaaaggtc |
11295579 |
T |
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| Q |
116 |
cataaaaatatttgaattctaaaa-tttttgttaatagtccttgaacatatataactttgtttttggtccttgatgttttgttttagaagtccttgcaaa |
214 |
Q |
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| T |
11295580 |
cataaaaatatttgaattctaaaattttttgtttttagtccttgaacatatataactttgtttttggtccttgatgttttgttttagaagtccttgcaaa |
11295679 |
T |
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| Q |
215 |
atttgttc------------------ataatatttattttagacttattctaagagacnnnnnnntcaaatcaaatagtctacacatataccagtatttc |
296 |
Q |
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| T |
11295680 |
atttgttcatattgaaattcgtctctataatatttattttagacttattctaagagacaaaaaaatcaaatcaaatagtctacacatataccagtatttc |
11295779 |
T |
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| Q |
297 |
ctcaagaaatcattaattcat |
317 |
Q |
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| T |
11295780 |
ctcaagaaatcattaattcat |
11295800 |
T |
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