View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12565_high_3 (Length: 321)

Name: NF12565_high_3
Description: NF12565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12565_high_3
NF12565_high_3
[»] chr1 (2 HSPs)
chr1 (186-315)||(22589260-22589389)
chr1 (54-171)||(22589509-22589626)
[»] chr2 (2 HSPs)
chr2 (186-315)||(30936267-30936396)
chr2 (64-171)||(30935449-30935556)
[»] chr8 (3 HSPs)
chr8 (189-315)||(15437451-15437577)
chr8 (189-315)||(15528755-15528881)
chr8 (186-232)||(8834571-8834617)
[»] chr5 (2 HSPs)
chr5 (64-154)||(34548115-34548205)
chr5 (186-232)||(4377019-4377065)
[»] scaffold0209 (2 HSPs)
scaffold0209 (186-232)||(7165-7211)
scaffold0209 (186-232)||(20619-20665)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 186 - 315
Target Start/End: Complemental strand, 22589389 - 22589260
Alignment:
Q  186 tatctttgaagtctttcagtagcatttgattttagtgttgactctgtatgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgtt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22589389 tatctttgaagtctttcagtagcatttgattttagtgttgactctgtttgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgtt 22589290  T
Q  286 gtaggtaattgtctttcatacctttgcttc 315  Q
    |||||||||||||||||||| |||||||||    
T  22589289 gtaggtaattgtctttcatatctttgcttc 22589260  T

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Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 22589626 - 22589509
Alignment:
Q  54 atatgctcattgctatgattcctttaaattgtagaatggaaaccaagctaactaatgtcttgtttagtctaaagttagattttatggagtggtctctaaa 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22589626 atatgctcattgctatgattcctttaaattgtagaatggaaaccaagctaactaatgtcttgtttagtctaaagttagattttatggagtggtctctaaa 22589527  T
Q  154 tattgctatcactattag 171  Q
    ||||||||||||||||||    
T  22589526 tattgctatcactattag 22589509  T

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Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 186 - 315
Target Start/End: Original strand, 30936267 - 30936396
Alignment:
Q  186 tatctttgaagtctttcagtagcatttgattttagtgttgactctgtatgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgtt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30936267 tatctttgaagtctttcagtagcatttgattttagtgttgactctgtttgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgtt 30936366  T
Q  286 gtaggtaattgtctttcatacctttgcttc 315  Q
     ||| ||||||||||||||| |||||||||    
T  30936367 atagataattgtctttcatatctttgcttc 30936396  T

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Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 30935449 - 30935556
Alignment:
Q  64 tgctatgattcctttaaattgtagaatggaaaccaagctaactaatgtcttgtttagtctaaagttagattttatggagtggtctctaaatattgctatc 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30935449 tgctatgattcctttaaattgtagaatggaaaccaagctaactaatgtcttttttagtctaaagttagattttatggagtggtctctaaattttgctatc 30935548  T
Q  164 actattag 171  Q
    ||||||||    
T  30935549 actattag 30935556  T

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Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 189 - 315
Target Start/End: Complemental strand, 15437577 - 15437451
Alignment:
Q  189 ctttgaagtctttcagtagcatttgattttagtgttgactctgtatgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgttgta 288  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15437577 ctttgaaatctttcagtagcatttgattttagtgttgactctgtttgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgttata 15437478  T
Q  289 ggtaattgtctttcatacctttgcttc 315  Q
    ||||||||||||||||| |||||||||    
T  15437477 ggtaattgtctttcatatctttgcttc 15437451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 189 - 315
Target Start/End: Complemental strand, 15528881 - 15528755
Alignment:
Q  189 ctttgaagtctttcagtagcatttgattttagtgttgactctgtatgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgttgta 288  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15528881 ctttgaaatctttcagtagcatttgattttagtgttgactctgtttgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgttata 15528782  T
Q  289 ggtaattgtctttcatacctttgcttc 315  Q
    ||||||||||||||||| |||||||||    
T  15528781 ggtaattgtctttcatatctttgcttc 15528755  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 8834617 - 8834571
Alignment:
Q  186 tatctttgaagtctttcagtagcatttgattttagtgttgactctgt 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8834617 tatctttgaagtctttcagtagcatttgattttagtgttgactctgt 8834571  T

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Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 34548205 - 34548115
Alignment:
Q  64 tgctatgattcctttaaattgtagaatggaaaccaagctaactaatgtcttgtttagtctaaagttagattttatggagtggtctctaaat 154  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34548205 tgctatgattcctttaaattgtagaatggaaaccaagttaactaatgtcttttttagtctaaagttagattttatggagtggtctctaaat 34548115  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 4377065 - 4377019
Alignment:
Q  186 tatctttgaagtctttcagtagcatttgattttagtgttgactctgt 232  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  4377065 tatctttgaaatctttcagtagcatttgattttagtgttgactctgt 4377019  T

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Target: scaffold0209 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 7165 - 7211
Alignment:
Q  186 tatctttgaagtctttcagtagcatttgattttagtgttgactctgt 232  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  7165 tatctttgaaatctttcagtagcatttgattttagtgttgactctgt 7211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 20619 - 20665
Alignment:
Q  186 tatctttgaagtctttcagtagcatttgattttagtgttgactctgt 232  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  20619 tatctttgaaatctttcagtagcatttgattttagtgttgactctgt 20665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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