View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12565_low_1 (Length: 706)
Name: NF12565_low_1
Description: NF12565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12565_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 2173494 - 2173751
Alignment:
| Q |
16 |
atataaacattgaatttttagcaattcaaccgtttattattatcatattatgatgaaacacaaagttttaaacaaatttaaaattcgtagctatgtaatc |
115 |
Q |
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| T |
2173494 |
atataaacattgaatttttagcaattcaaccgtttattattatcatattatgatgaaacacaaagttttaaacaaatttaaaattcgtagctatgtaatc |
2173593 |
T |
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| Q |
116 |
cgatgcatggttttgaagatgttatgcattaggaatactaaaaggctcaaagatggattggttcaatgaggtatgaaaaagaaaattggtattggtatat |
215 |
Q |
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| T |
2173594 |
cgatgcatggttttgaagatgttatgcattaggaatactaaaaggctcaaagatggattggtacaatgaggtatgaaaaagaaaattggtattggtatat |
2173693 |
T |
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| Q |
216 |
aatgtgtagctgtggaaatttacatcttaagcaaggcttcccaagattttattagttgt |
274 |
Q |
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| T |
2173694 |
aatgtgt-gctgtggaaatttacatcttaagcaaggcttcccaagattttattagttgt |
2173751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 448 - 665
Target Start/End: Original strand, 2173890 - 2174099
Alignment:
| Q |
448 |
tttggtaaaatcaatctacattcatctttgtaggaacttcttctctccttctttggtgggcgg--ttgggagctcttggctcaattgcgggaagccatgc |
545 |
Q |
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| T |
2173890 |
tttggtaaaatcaatctacattcatctttgtaggaacttcttctctccttctttggtggggggggtagggagctcttggctcaattgcgggaagccatgc |
2173989 |
T |
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| Q |
546 |
ccccatcaaaggtagtaannnnnnnaattgaaataattgttggattccttaccaacaagattgattgaacttggcgaggcgaggggtctttcgaaaggat |
645 |
Q |
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| T |
2173990 |
ccc-atcaaaggtagtaa---------ttgaaataattgttggattccttaccaacaagattgattgaacttggcgaggcgaggggtctttcgaaaggat |
2174079 |
T |
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| Q |
646 |
gggctagaaaattgtatttg |
665 |
Q |
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| T |
2174080 |
gggctagaaaattgtatttg |
2174099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 2173775 - 2173896
Alignment:
| Q |
274 |
tccgattttggggagtggg-cagatggtaagtggttgtagtggagtaaatggaggctgccattct--gtttgggaggaagagttttgcaagaagctggtg |
370 |
Q |
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| T |
2173775 |
tccgattttggggagtggggcagatggtaagtggttgtggcggagtaaatggaggctgccattctttgtttgggaggaagagttttgcaagaagctggtg |
2173874 |
T |
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| Q |
371 |
gagttggtctcttcgtttggta |
392 |
Q |
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| T |
2173875 |
gagttggtctcttcgtttggta |
2173896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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