View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12565_low_2 (Length: 380)

Name: NF12565_low_2
Description: NF12565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12565_low_2
NF12565_low_2
[»] chr2 (10 HSPs)
chr2 (169-360)||(14494428-14494619)
chr2 (168-360)||(14501914-14502106)
chr2 (169-361)||(14476265-14476457)
chr2 (169-360)||(14484974-14485165)
chr2 (179-361)||(14481447-14481629)
chr2 (187-289)||(14144664-14144766)
chr2 (187-360)||(14152646-14152819)
chr2 (179-360)||(14165428-14165609)
chr2 (171-360)||(14162368-14162557)
chr2 (105-138)||(14506893-14506926)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 169 - 360
Target Start/End: Original strand, 14494428 - 14494619
Alignment:
Q  169 cccattacccttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaattt 268  Q
    |||||| || |||||||||||||| | ||||||| |||| ||||||||||||||| |||||||||||||||| ||||  |||||||| |||||||||| |    
T  14494428 cccatttccattttctctccatttatgcaccaacgcttctgattcaacctcttttgctgtctcatacctcattcacaagtttgggtttgacccacaatct 14494527  T
Q  269 gcttccaaactctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctc 360  Q
    |||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  14494528 gcttccaaactctgctccacttacaagctctgttttaagaatgcccaaaaacctgactctgttctcaacttctttaggaaccatggtttctc 14494619  T

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Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 168 - 360
Target Start/End: Original strand, 14501914 - 14502106
Alignment:
Q  168 ccccattacccttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatt 267  Q
    |||||||||| |||||||| ||||| | ||||||| |||||||||||||||| ||| ||||||||||||||||| ||| |||||| || |||||||||||    
T  14501914 ccccattaccattttctcttcatttctgcaccaacacttcagattcaacctcattttctgtctcatacctcatcaacaattttggctttgacccacaatt 14502013  T
Q  268 tgcttccaaactctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctc 360  Q
    ||||||||||||||||||||| ||||||||| ||||  | |||| |||||| ||||| ||||||||||| ||||| |||||| ||||||||||    
T  14502014 tgcttccaaactctgctccacctacaagctccgtttcaagactgaccaaaaccctgattctgttctcaaattctttagaaactatggtttctc 14502106  T

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Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 169 - 361
Target Start/End: Complemental strand, 14476457 - 14476265
Alignment:
Q  169 cccattacccttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaattt 268  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||| ||||||||| ||| |||||| || |||||||||| |    
T  14476457 cccattaccctttcctctccatttttgcaccaacacttcagattcaacctcttttgctgtctcctacctcatcaacaattttggctttgacccacaatct 14476358  T
Q  269 gcttccaaactctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctca 361  Q
    ||||||||||| | ||||||||||||  |   |||  | | |||||||||||||||||||||||||| |||||| |||||| |||||||||||    
T  14476357 gcttccaaactttcctccacttacaatgttactttcaagaatgcccaaaaacctgactctgttctcaccttctttagaaactatggtttctca 14476265  T

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Target: chr2; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 169 - 360
Target Start/End: Original strand, 14484974 - 14485165
Alignment:
Q  169 cccattacccttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaattt 268  Q
    ||||||||| ||||||| | |||||||||||||| ||||||||||||||| |||| | ||||| ||||||||| ||| |||||| ||   ||||||||||    
T  14484974 cccattaccattttctcactatttttccaccaacacttcagattcaaccttttttgccgtctcttacctcatcaacaattttggcttttccccacaattt 14485073  T
Q  269 gcttccaaactctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctc 360  Q
    ||||||||||| | ||||||||||||  |   |||  ||||||||| ||||||||| || |||||||||||||| |||||||||||||||||    
T  14485074 gcttccaaactttcctccacttacaatgttcatttcaaaactgcccgaaaacctgattcagttctcaacttctttagaaaccatggtttctc 14485165  T

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Target: chr2; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 179 - 361
Target Start/End: Complemental strand, 14481629 - 14481447
Alignment:
Q  179 ttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaac 278  Q
    |||||||| | ||||| ||||||  |||||||||||||||||||| | ||||||||||||||| ||| |||||| ||   ||||||||||||||||||||    
T  14481629 ttttctcttcctttttgcaccaatacttcagattcaacctcttttgcagtctcatacctcatcaacaattttggcttttccccacaatttgcttccaaac 14481530  T
Q  279 tctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctca 361  Q
    | || |||||||||||| | |||||  ||||   |||||||||||| || ||| |||||||||| ||||||||||||||||||    
T  14481529 tttgttccacttacaaggtttgtttcaaaaccaaccaaaaacctgattcagttgtcaacttctttagaaaccatggtttctca 14481447  T

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Target: chr2; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 14144664 - 14144766
Alignment:
Q  187 ccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaactctgctcc 286  Q
    |||||| | ||||||| |||||||||||||||||||| | | ||| |||||||| |||| ||||||||| ||||||||||||||||||||||| ||||||    
T  14144664 ccatttctgcaccaacccttcagattcaacctcttttgcagcctcctacctcattcacaattttgggtttgacccacaatttgcttccaaactatgctcc 14144763  T
Q  287 act 289  Q
    |||    
T  14144764 act 14144766  T

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Target: chr2; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 187 - 360
Target Start/End: Original strand, 14152646 - 14152819
Alignment:
Q  187 ccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaactctgctcc 286  Q
    |||||| | ||||||| ||||||||||||||||| || | ||||| ||||||||| ||| |||||| || |||||||||| ||||||||||||||| |||    
T  14152646 ccatttctgcaccaacacttcagattcaacctctcttgcagtctcctacctcatcaacaattttggttttgacccacaatctgcttccaaactctgttcc 14152745  T
Q  287 acttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctc 360  Q
    || ||| | ||  ||||  | ||  ||||||||||||| ||| ||||||  ||||| |||||| |||| |||||    
T  14152746 acctaccatcttcgtttcaagaccacccaaaaacctgaatcttttctcacattctttagaaactatggattctc 14152819  T

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Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 360
Target Start/End: Complemental strand, 14165609 - 14165428
Alignment:
Q  179 ttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaac 278  Q
    |||||||| ||||| | ||||||| ||||| |||||||||| ||| | | ||| |||||||| |||| |||||||||   ||||||||||||||||||||    
T  14165609 ttttctctacatttctgcaccaacacttcaaattcaacctcatttgcagcctcttacctcattcacaattttgggtttaccccacaatttgcttccaaac 14165510  T
Q  279 tctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctc 360  Q
    |||| ||| || ||   ||  ||||  | ||  ||||||||||||| ||||||||||  ||||| |||||| ||||||||||    
T  14165509 tctgttccgctcaccgtcttcgtttcaagaccacccaaaaacctgaatctgttctcacattctttagaaactatggtttctc 14165428  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 360
Target Start/End: Complemental strand, 14162557 - 14162368
Alignment:
Q  171 cattacccttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgc 270  Q
    ||||||| |||||| | ||||| | ||| ||  ||||||||||| | || |||  ||| || || |||||||| | |||||| |||  ||||||||||||    
T  14162557 cattaccattttctttgcatttctgcactaaaacttcagattcaccttcatttgttgtgtcctatctcatccataattttggcttcaccccacaatttgc 14162458  T
Q  271 ttccaaactctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctc 360  Q
    ||| ||||||| |||| |||||||  |  ||||  | ||||| ||||||||||| ||||||||||  ||||| ||||  |||||||||||    
T  14162457 ttctaaactcttctcctcttacaatgttcgtttcaacactgctcaaaaacctgattctgttctcagtttctttagaagtcatggtttctc 14162368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 14506893 - 14506926
Alignment:
Q  105 aaatgttgaatattcatcgttatagagtccttct 138  Q
    ||||||||||||||||||||||||||||||||||    
T  14506893 aaatgttgaatattcatcgttatagagtccttct 14506926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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