View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12565_low_4 (Length: 220)
Name: NF12565_low_4
Description: NF12565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12565_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 482521 - 482726
Alignment:
| Q |
15 |
gagcccaatatgaatgcacctaagaacttcagactcataatcaagacatgattccaataatataggatctgcaaattctaatccttttccttcattccac |
114 |
Q |
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| T |
482521 |
gagcccaatatgaatgcacctaagaacttcagactcataatcaagacatgattccaataatataggatctgcaaattctaatccttttccttcattccac |
482620 |
T |
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| Q |
115 |
agcttccaagcctgttatagtttgaataatactaattaatcaaaattagcaaaagtgaagtggtattatatatactactagtaaagcaaagggtttggct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
482621 |
agcttccaagcctgttatagtttgaataatactaattaatcaaaattagcaaaagtgaagtggtattatatatactactagtaaagcaaagggtttggct |
482720 |
T |
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| Q |
215 |
aatgaa |
220 |
Q |
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|||||| |
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| T |
482721 |
aatgaa |
482726 |
T |
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