View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12566_high_1 (Length: 514)

Name: NF12566_high_1
Description: NF12566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12566_high_1
NF12566_high_1
[»] chr5 (9 HSPs)
chr5 (139-288)||(25222823-25222973)
chr5 (139-288)||(25286979-25287129)
chr5 (321-473)||(25222678-25222816)
chr5 (321-473)||(25286834-25286972)
chr5 (50-106)||(25222973-25223029)
chr5 (50-106)||(25287129-25287185)
chr5 (1-39)||(25223489-25223527)
chr5 (1-39)||(25287645-25287683)
chr5 (50-118)||(37155201-37155269)
[»] chr6 (1 HSPs)
chr6 (401-495)||(35213217-35213313)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 8e-56; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 139 - 288
Target Start/End: Complemental strand, 25222973 - 25222823
Alignment:
Q  139 tcctcttaaatagctgtatcataaacttttaaggtgcacatttatttgataaaaa-gaaaattagtcccttctgcctttccaccctttttcctaacctca 237  Q
    |||||||||||||||||||||||||||| | | |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  25222973 tcctcttaaatagctgtatcataaacttgtgacgtgcacatttatttgataaaaaagaaaattagtcccttctgcctctccaccctttttcctaacctca 25222874  T
Q  238 tacaccctacacggtatcgcttcagaagcataatatattccaaggtgaaaa 288  Q
    | |||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  25222873 ttcaccctacacagtatcgcatcagaagcataatatattccaagttgaaaa 25222823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 139 - 288
Target Start/End: Complemental strand, 25287129 - 25286979
Alignment:
Q  139 tcctcttaaatagctgtatcataaacttttaaggtgcacatttatttgataaaaa-gaaaattagtcccttctgcctttccaccctttttcctaacctca 237  Q
    |||||||||||||||||||||||||||| | | |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  25287129 tcctcttaaatagctgtatcataaacttgtgacgtgcacatttatttgataaaaaagaaaattagtcccttctgcctctccaccctttttcctaacctca 25287030  T
Q  238 tacaccctacacggtatcgcttcagaagcataatatattccaaggtgaaaa 288  Q
    | |||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  25287029 ttcaccctacacagtatcgcatcagaagcataatatattccaagttgaaaa 25286979  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 321 - 473
Target Start/End: Complemental strand, 25222816 - 25222678
Alignment:
Q  321 taaccgattatttcaagaaaaatttgcatccttgcattgcaaatataagtagtttaaaatgaaattagaaaaggaaacaattaatctttgaacgtggcga 420  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||              ||||||||| || ||||||||| ||||||||||| ||    
T  25222816 taaccgattatttcaagaaaaatttgcaaccttgcattgcaaatatgag--------------attagaaaaagagacaattaatttttgaacgtgggga 25222731  T
Q  421 aacaatagccttgcccatgactgcgttgttggggtaatgtttttgttcttgtt 473  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25222730 aacaatagccttgcccatgactgcgttgtcggggtaatgtttttgttcttgtt 25222678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 321 - 473
Target Start/End: Complemental strand, 25286972 - 25286834
Alignment:
Q  321 taaccgattatttcaagaaaaatttgcatccttgcattgcaaatataagtagtttaaaatgaaattagaaaaggaaacaattaatctttgaacgtggcga 420  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||              ||||||||| || ||||||||| ||||||||||| ||    
T  25286972 taaccgattatttcaagaaaaatttgcaaccttgcattgcaaatatgag--------------attagaaaaagagacaattaatttttgaacgtgggga 25286887  T
Q  421 aacaatagccttgcccatgactgcgttgttggggtaatgtttttgttcttgtt 473  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25286886 aacaatagccttgcccatgactgcgttgtcggggtaatgtttttgttcttgtt 25286834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 25223029 - 25222973
Alignment:
Q  50 atggatagtttgagagtttctgttagtgacattgatagcatgcaaattggtggtatt 106  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||    
T  25223029 atggatagtttgagattttctgttagtgacattgatagcatgcaaaatagtggtatt 25222973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 25287185 - 25287129
Alignment:
Q  50 atggatagtttgagagtttctgttagtgacattgatagcatgcaaattggtggtatt 106  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||    
T  25287185 atggatagtttgagattttctgttagtgacattgatagcatgcaaaatagtggtatt 25287129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25223527 - 25223489
Alignment:
Q  1 aatattaagggacttttaacaagtatttgaaaataagag 39  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  25223527 aatattaagggacttttaagaagtatttgaaaataagag 25223489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25287683 - 25287645
Alignment:
Q  1 aatattaagggacttttaacaagtatttgaaaataagag 39  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  25287683 aatattaagggacttttaagaagtatttgaaaataagag 25287645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 37155201 - 37155269
Alignment:
Q  50 atggatagtttgagagtttctgttagtgacattgatagcatgcaaattggtggtattttagtctcacaa 118  Q
    |||||||||||| || ||||||||||| |||||||| || || ||| || ||||||||||| |||||||    
T  37155201 atggatagtttgggattttctgttagtaacattgatggcctgaaaaatgctggtattttagcctcacaa 37155269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 401 - 495
Target Start/End: Complemental strand, 35213313 - 35213217
Alignment:
Q  401 ttaatctttgaacgtggcgaaacaatagccttgcccatgactgcgttgttggggtaatgtttttgttcttgttgttgata--atatgaaatggataa 495  Q
    |||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  35213313 ttaatcttggaacgtggctaaacaatagccatgcccgtgactgcgttgttggggtaatgtttttgttcttgttgttgataatatatgaaatggataa 35213217  T

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