View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12566_high_5 (Length: 269)
Name: NF12566_high_5
Description: NF12566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12566_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 7474990 - 7475236
Alignment:
| Q |
10 |
aagcataggatatttgcaacatcatcattgcaatagtagaatgcattgtttgtaatccaatgataaatgccgttaacaagattgttatatttggagggaa |
109 |
Q |
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| T |
7474990 |
aagcataggatatttgcaacatcatcattgcgatagaagaatgcattgtttgtaatccaatgataaatgccgttaacaagattgttatatttggagggaa |
7475089 |
T |
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| Q |
110 |
tttttggtgtgatgatagtaaaaggaggagcatgtagggtaggagtccatgatttagtacctagactataaacttccgcccatgaaatataatgtttctt |
209 |
Q |
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| T |
7475090 |
tttttcgtgtgatgatagtaaaaggaggagcatgtagggtaggagtccatgatttagtacctagactataaacttccgcccatgaaatataatgtttctt |
7475189 |
T |
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| Q |
210 |
ctcgtaatacttgacatggagtttcacaactttgaaatcaatgatgt |
256 |
Q |
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| T |
7475190 |
ctcgtaatacttgacatggagtttcacaactttgaaatcaatgatgt |
7475236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 188
Target Start/End: Complemental strand, 6944180 - 6943999
Alignment:
| Q |
10 |
aagcataggatatttgcaacatcatcattgcaatagtagaatgcattgtttgtaatccaatgataaatgccgttaacaagattgttatatttggagggaa |
109 |
Q |
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| T |
6944180 |
aagcataagatatttgcaacaccatcatagcgatggtagaatgaattttttgtaatccaatgataaacgccgttaacaagagtgttatatttgaagggac |
6944081 |
T |
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| Q |
110 |
tttttggtgtgatgatagtaaa---aggaggagcatgtagggtaggagtccatgatttagtacctagactataaacttccgc |
188 |
Q |
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| T |
6944080 |
attgacgtgtgatgatagtaaaaggaggaggaggatgtcgggtaggggtccatgatttagtgattagactataaacttccgc |
6943999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 7495341 - 7495535
Alignment:
| Q |
13 |
cataggatatttgcaacatcatcattgcaatagtagaatgcattgtttgtaatccaatgataaatgccgttaacaagattgttatatttggagggaattt |
112 |
Q |
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| T |
7495341 |
catagaatatttgcagcataatcattgggatagtaatatgtattctctgtaatccaatgataaacaccattaacaagagtgttgtatttagaaggacgtt |
7495440 |
T |
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| Q |
113 |
ttggtgtgatgatagtaaaaggaggagcatgtagggtaggagtccatgatttagtacctagactataaacttccgcccatgaaatataatgtttc |
207 |
Q |
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| T |
7495441 |
gacgcgtgatgatagttaaaggatgaggatgttgagtaggggtccataatttagtacttagattataaacttccgcgaaggaaatataatgtttc |
7495535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 7873470 - 7873385
Alignment:
| Q |
14 |
ataggatatttgcaacatcatcattgcaatagtagaatgcattgtttgtaatccaatgataaatgccgttaacaagattgttatat |
99 |
Q |
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| T |
7873470 |
atagaatattcgcaaaaccatcattgctatagtagagtgaattgtctgtaatccaatgataaacgccgttaacaagagtgttatat |
7873385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 13877809 - 13877851
Alignment:
| Q |
60 |
tgtaatccaatgataaatgccgttaacaagattgttatatttg |
102 |
Q |
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| T |
13877809 |
tgtaatccaatgataaatgccattaacaagaatgttgtatttg |
13877851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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