View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12566_low_2 (Length: 446)
Name: NF12566_low_2
Description: NF12566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12566_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 85 - 435
Target Start/End: Complemental strand, 24882351 - 24882002
Alignment:
| Q |
85 |
gtgtgtggaatgtattttttaaatatgcttaatttgatcaaagtttgcttataattttcttgagttnnnnnnntgccaccgtggaattaatataaaatta |
184 |
Q |
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| T |
24882351 |
gtgtgtggaatgtattttttaaatatgcttaatttgatcaaa-tttgcttataattttcttgagttaaaaaaatgccaccgtggaattaatataaaatta |
24882253 |
T |
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| Q |
185 |
tactagtacattttgatttatatagactcgaagtccatcgtggggtttattggatcatgtgttgcacacaatttattgccggtggttgctcgcttttcaa |
284 |
Q |
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| T |
24882252 |
tactagtacattttgatttatatagactcgaagtccatcgtggggtttattggatcatgtgttgcacacaatttattgccggtggttgctcgcttttcaa |
24882153 |
T |
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| Q |
285 |
gtctctctaattttataaattcaaactttgaatttttcttctttcaactataaaaaacagtgattgcctaagttaaaggccaactcaactcttgctacaa |
384 |
Q |
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| T |
24882152 |
gtctctctaattttataaattcaaactttgaatttttcttctttcaactataaaaaacagtgattgcctaagttaaaggccaactcaactcttgctacaa |
24882053 |
T |
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| Q |
385 |
agtatgtggttcatgaatttccttatgatatatatgtcctacaccattcat |
435 |
Q |
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| T |
24882052 |
agtatgtggttcatgaatttcctcatgatatatatgtcctacaccattcat |
24882002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28102085 - 28102024
Alignment:
| Q |
1 |
ccctgtttatgtgtgtgttgctcacctctttgctctgctacaacaggcataaccatacatac |
62 |
Q |
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| T |
28102085 |
ccctgtttatggttgtgttgctcacctctttgctcttcaacaacaggtatatacatacatac |
28102024 |
T |
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